Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01426 Eucalyptus grandis HOM05D035512 ORTHO05D000959 6.6e-63 243.8 118 100.0
Eucgr.D01425 Eucalyptus grandis HOM05D035512 ORTHO05D000959 2.6e-59 231.9 118 94.9
Eucgr.D01422 Eucalyptus grandis HOM05D035512 ORTHO05D000959 2.2e-58 228.8 118 94.1
Eucgr.D01420 Eucalyptus grandis HOM05D000519 ORTHO05D000959 3.8e-18 95.1 101 51.5
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-12 77.0 114 39.5
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 6.9e-12 74.3 100 39.0
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 9.9e-11 70.5 115 36.5
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.3e-10 70.1 118 37.3
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 1.7e-10 69.7 114 36.8
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 6.4e-10 67.8 111 33.3
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 8.4e-10 67.4 114 36.8
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 8.4e-10 67.4 101 35.6
FvH4_3g08020 Fragaria vesca HOM05D000519 ORTHO05D000959 1.1e-09 67.0 118 38.1
FAN16G0731 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.1e-09 67.0 118 38.1
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 1.1e-09 67.0 82 35.4
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-09 67.0 109 33.9
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.4e-09 66.6 110 35.5
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.4e-09 66.6 110 39.1
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.2e-09 65.1 111 38.7
Medtr2g103740 Medicago truncatula HOM05D000519 ORTHO05D000959 4.2e-09 65.1 104 37.5
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 4.2e-09 65.1 114 36.8
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 4.2e-09 65.1 110 32.7
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 5.5e-09 64.7 108 35.2
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 7.1e-09 64.3 109 37.6
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 7.1e-09 64.3 83 38.6
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 9.3e-09 63.9 115 33.9
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 9.3e-09 63.9 111 37.8
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 9.3e-09 63.9 108 35.2
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 1.2e-08 63.5 109 33.9
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 1.2e-08 63.5 113 31.0
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.2e-08 63.5 109 36.7
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.2e-08 63.5 109 36.7
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.6e-08 63.2 105 35.2
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 1.6e-08 63.2 88 34.1
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.6e-08 63.2 110 31.8
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 2.1e-08 62.8 107 31.8
CARHR126700 Cardamine hirsuta HOM05D000519 ORTHO05D000959 2.7e-08 62.4 114 34.2
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 2.7e-08 62.4 113 34.5
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 2.7e-08 62.4 113 34.5
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 2.7e-08 62.4 127 37.0
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 3.5e-08 62.0 112 33.9
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 4.6e-08 61.6 113 34.5
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 4.6e-08 61.6 113 32.7
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 4.6e-08 61.6 110 36.4
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 6.0e-08 61.2 113 34.5
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 6.0e-08 61.2 113 34.5
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 6.0e-08 61.2 108 34.3
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 7.9e-08 60.8 85 32.9
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 7.9e-08 60.8 111 35.1
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 1.0e-07 60.5 110 31.8
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 1.3e-07 60.1 84 34.5
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 1.3e-07 60.1 113 33.6
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.3e-07 60.1 109 33.0
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 1.3e-07 60.1 109 31.2
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 1.3e-07 60.1 115 33.9
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 1.8e-07 59.7 122 32.8
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 1.8e-07 59.7 84 32.1
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 2.3e-07 59.3 113 34.5
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 2.3e-07 59.3 115 35.7
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 2.3e-07 59.3 86 34.9
Prupe.4G009100 Prunus persica HOM05D000519 ORTHO05D000959 2.3e-07 59.3 118 33.1
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.0e-07 58.9 84 32.1
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 3.0e-07 58.9 114 33.3
Sed0004852 Sechium edule HOM05D000519 ORTHO05D000959 3.0e-07 58.9 109 36.7
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 3.0e-07 58.9 107 30.8
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 3.9e-07 58.5 111 33.3
C09p31850 Brassica napus HOM05D000519 ORTHO05D000959 3.9e-07 58.5 90 34.4
BraA09t38071Z Brassica rapa HOM05D000519 ORTHO05D000959 3.9e-07 58.5 90 34.4
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 3.9e-07 58.5 119 32.8
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 3.9e-07 58.5 109 31.2
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 3.9e-07 58.5 109 31.2
arahy.Tifrunner.gnm1.ann1.4ZS9PZ Arachis hypogaea HOM05D000519 ORTHO05D000959 5.1e-07 58.2 79 36.7
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.1e-07 58.2 111 32.4
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 5.1e-07 58.2 114 35.1
A09p24860 Brassica napus HOM05D000519 ORTHO05D000959 6.7e-07 57.8 90 34.4
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 6.7e-07 57.8 104 29.8
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 6.7e-07 57.8 83 34.9
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 8.7e-07 57.4 111 33.3
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 1.1e-06 57.0 76 32.9
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.1e-06 57.0 113 31.0
Eucgr.E03921 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.1e-06 57.0 110 32.7
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 1.1e-06 57.0 101 33.7
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-06 57.0 103 34.0
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 1.1e-06 57.0 111 32.4
BcaC02g10392 Brassica carinata HOM05D000519 ORTHO05D000959 1.5e-06 56.6 115 33.9
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.5e-06 56.6 115 33.0
C04p29440 Brassica napus HOM05D000519 ORTHO05D000959 1.5e-06 56.6 115 33.9
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 1.5e-06 56.6 110 32.7
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.5e-06 56.6 77 32.5
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 1.5e-06 56.6 119 30.3
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 1.5e-06 56.6 91 35.2
BcaC04g21429 Brassica carinata HOM05D000519 ORTHO05D000959 1.9e-06 56.2 90 32.2
C09p31910 Brassica napus HOM05D000519 ORTHO05D000959 1.9e-06 56.2 90 32.2
BolC9t56041H Brassica oleracea HOM05D000519 ORTHO05D000959 1.9e-06 56.2 90 32.2
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.9e-06 56.2 77 32.5
Eucgr.E03923 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.9e-06 56.2 99 32.3
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 1.9e-06 56.2 113 31.0
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 114 31.6
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 2.5e-06 55.8 100 29.0
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 2.5e-06 55.8 108 34.3
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 3.3e-06 55.5 114 33.3
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 3.3e-06 55.5 113 31.9
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.3e-06 55.5 95 31.6
Migut.M01410 Erythranthe guttata HOM05D000519 ORTHO05D000959 4.3e-06 55.1 110 30.9
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 4.3e-06 55.1 105 30.5
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 4.3e-06 55.1 114 30.7
arahy.Tifrunner.gnm1.ann1.QX2NVJ Arachis hypogaea HOM05D000519 ORTHO05D000959 5.6e-06 54.7 93 36.6
Eucgr.E03920 Eucalyptus grandis HOM05D000519 ORTHO05D000959 5.6e-06 54.7 84 32.1
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 5.6e-06 54.7 111 31.5
EL10Ac8g20214 Beta vulgaris HOM05D000519 ORTHO05D000959 7.4e-06 54.3 111 32.4
Nn5g27758 Nelumbo nucifera HOM05D000519 ORTHO05D000959 7.4e-06 54.3 111 30.6
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 7.4e-06 54.3 81 33.3
Thecc.03G313400 Theobroma cacao HOM05D000519 ORTHO05D000959 7.4e-06 54.3 113 33.6
HPP92_024485 Vanilla planifolia HOM05D000519 ORTHO05D000959 7.4e-06 54.3 107 31.8
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 9.6e-06 53.9 115 33.0
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 9.6e-06 53.9 115 33.0
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 9.6e-06 53.9 115 31.3
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 9.6e-06 53.9 123 31.7


User provided reference genes

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