Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01422 Eucalyptus grandis HOM05D035512 ORTHO05D000959 1.9e-62 242.3 118 100.0
Eucgr.D01425 Eucalyptus grandis HOM05D035512 ORTHO05D000959 4.7e-61 237.7 118 97.5
Eucgr.D01426 Eucalyptus grandis HOM05D035512 ORTHO05D000959 3.7e-58 228.0 118 94.1
Eucgr.D01420 Eucalyptus grandis HOM05D000519 ORTHO05D000959 6.9e-20 100.9 101 52.5
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 9.0e-12 73.9 111 37.8
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 2.6e-11 72.4 114 37.7
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 8.4e-10 67.4 115 35.7
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 8.4e-10 67.4 114 36.0
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 1.1e-09 67.0 118 36.4
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.4e-09 66.6 108 36.1
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-09 66.2 110 35.5
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.9e-09 66.2 109 37.6
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 3.2e-09 65.5 111 32.4
FvH4_3g08020 Fragaria vesca HOM05D000519 ORTHO05D000959 3.2e-09 65.5 118 37.3
FAN16G0731 Fragaria x ananassa HOM05D000519 ORTHO05D000959 3.2e-09 65.5 118 37.3
Medtr2g103740 Medicago truncatula HOM05D000519 ORTHO05D000959 3.2e-09 65.5 104 38.5
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.2e-09 65.1 111 38.7
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 4.2e-09 65.1 103 35.0
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 5.5e-09 64.7 113 36.3
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 5.5e-09 64.7 109 34.9
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 5.5e-09 64.7 108 34.3
CARHR126700 Cardamine hirsuta HOM05D000519 ORTHO05D000959 7.1e-09 64.3 114 34.2
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 7.1e-09 64.3 109 33.0
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 9.3e-09 63.9 114 36.0
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 9.3e-09 63.9 111 37.8
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 9.3e-09 63.9 108 34.3
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 1.2e-08 63.5 111 36.0
FAN25G1172 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.6e-08 63.2 118 38.1
Glyma.04G096400 Glycine max HOM05D000519 ORTHO05D000959 1.6e-08 63.2 104 33.7
Glyma.19G206500 Glycine max HOM05D000519 ORTHO05D000959 1.6e-08 63.2 104 33.7
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.6e-08 63.2 109 36.7
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.6e-08 63.2 109 36.7
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 2.1e-08 62.8 111 35.1
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 2.1e-08 62.8 114 36.0
arahy.Tifrunner.gnm1.ann1.L1FG9J Arachis hypogaea HOM05D000519 ORTHO05D000959 2.7e-08 62.4 113 36.3
Glyma.15G115300 Glycine max HOM05D000519 ORTHO05D000959 2.7e-08 62.4 104 32.7
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.7e-08 62.4 109 33.0
Phvul.006G142600 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 2.7e-08 62.4 104 31.7
Glyma.09G010900 Glycine max HOM05D000519 ORTHO05D000959 3.5e-08 62.0 104 33.7
Glyma.09G110600 Glycine max HOM05D000519 ORTHO05D000959 3.5e-08 62.0 104 33.7
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 3.5e-08 62.0 83 37.3
TWI63G0767 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 3.5e-08 62.0 113 32.7
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 4.6e-08 61.6 111 34.2
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 4.6e-08 61.6 110 31.8
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 6.0e-08 61.2 108 33.3
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 6.0e-08 61.2 110 32.7
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 6.0e-08 61.2 122 33.6
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 6.0e-08 61.2 109 32.1
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 6.0e-08 61.2 114 35.1
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 6.0e-08 61.2 127 36.2
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 7.9e-08 60.8 115 32.2
Ciclev10002632m.g Citrus clementina HOM05D000519 ORTHO05D000959 7.9e-08 60.8 85 36.5
Glyma.11G064200 Glycine max HOM05D000519 ORTHO05D000959 7.9e-08 60.8 104 32.7
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 7.9e-08 60.8 110 36.4
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 1.0e-07 60.5 111 28.8
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 1.3e-07 60.1 114 34.2
Prupe.4G009100 Prunus persica HOM05D000519 ORTHO05D000959 1.3e-07 60.1 116 32.8
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 1.8e-07 59.7 116 33.6
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 1.8e-07 59.7 115 33.9
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.3e-07 59.3 107 34.6
A09p24850 Brassica napus HOM05D000519 ORTHO05D000959 2.3e-07 59.3 115 35.7
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 3.0e-07 58.9 113 32.7
Ciclev10003263m.g Citrus clementina HOM05D000519 ORTHO05D000959 3.0e-07 58.9 96 36.5
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 3.0e-07 58.9 108 38.0
Sed0004852 Sechium edule HOM05D000519 ORTHO05D000959 3.9e-07 58.5 112 36.6
C09p31850 Brassica napus HOM05D000519 ORTHO05D000959 5.1e-07 58.2 115 33.9
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 5.1e-07 58.2 106 32.1
Ciclev10004025m.g Citrus clementina HOM05D000519 ORTHO05D000959 5.1e-07 58.2 78 37.2
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 5.1e-07 58.2 111 27.9
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.1e-07 58.2 110 30.9
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 5.1e-07 58.2 114 33.3
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 5.1e-07 58.2 111 33.3
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 5.1e-07 58.2 109 31.2
Ciclev10003705m.g Citrus clementina HOM05D000519 ORTHO05D000959 6.7e-07 57.8 78 37.2
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 8.7e-07 57.4 104 32.7
Sed0023459 Sechium edule HOM05D000519 ORTHO05D000959 8.7e-07 57.4 115 31.3
arahy.Tifrunner.gnm1.ann1.QX2NVJ Arachis hypogaea HOM05D000519 ORTHO05D000959 1.1e-06 57.0 93 37.6
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 1.1e-06 57.0 119 31.1
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.5e-06 56.6 114 34.2
Thecc.03G313400 Theobroma cacao HOM05D000519 ORTHO05D000959 1.5e-06 56.6 109 32.1
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 1.9e-06 56.2 113 31.0
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 1.9e-06 56.2 110 32.7
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 1.9e-06 56.2 108 29.6
RcHm_v2.0_Chr5g0010271 Rosa chinensis HOM05D000519 ORTHO05D000959 1.9e-06 56.2 103 34.0
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 2.5e-06 55.8 76 31.6
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 2.5e-06 55.8 112 34.8
Thhalv10017424m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 2.5e-06 55.8 119 31.9
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 2.5e-06 55.8 113 30.1
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 3.3e-06 55.5 115 33.0
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 3.3e-06 55.5 109 30.3
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 3.3e-06 55.5 109 30.3
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 3.3e-06 55.5 83 33.7
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 4.3e-06 55.1 115 32.2
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 4.3e-06 55.1 113 32.7
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 4.3e-06 55.1 109 30.3
arahy.Tifrunner.gnm1.ann1.4ZS9PZ Arachis hypogaea HOM05D000519 ORTHO05D000959 5.6e-06 54.7 107 31.8
A09p24860 Brassica napus HOM05D000519 ORTHO05D000959 5.6e-06 54.7 115 32.2
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 5.6e-06 54.7 113 28.3
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 5.6e-06 54.7 81 33.3
BcaB05g24554 Brassica carinata HOM05D000519 ORTHO05D026768 7.4e-06 54.3 83 31.3
BcaC02g10392 Brassica carinata HOM05D000519 ORTHO05D000959 7.4e-06 54.3 115 32.2
C04p29440 Brassica napus HOM05D000519 ORTHO05D000959 7.4e-06 54.3 115 32.2
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 7.4e-06 54.3 101 31.7
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 7.4e-06 54.3 86 32.6
Migut.M01410 Erythranthe guttata HOM05D000519 ORTHO05D000959 7.4e-06 54.3 110 30.9
Lj3g0000523 Lotus japonicus HOM05D000519 ORTHO05D000959 7.4e-06 54.3 100 33.0
Manes.09G039400 Manihot esculenta HOM05D000519 ORTHO05D000959 7.4e-06 54.3 101 34.7
BraA09t38071Z Brassica rapa HOM05D000519 ORTHO05D000959 9.6e-06 53.9 115 32.2
CARHR126710 Cardamine hirsuta HOM05D000519 ORTHO05D000959 9.6e-06 53.9 109 33.9
Ca_21039_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 9.6e-06 53.9 107 32.7
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 9.6e-06 53.9 113 31.9


User provided reference genes

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