Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.0e-61 238.8 112 100.0
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.7e-24 114.4 66 78.8
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 4.1e-22 108.2 109 49.5
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 7.0e-22 107.5 70 71.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 4.5e-21 104.8 109 50.5
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 5.9e-21 104.4 103 49.5
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.9e-21 104.4 64 65.6
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.0e-20 103.6 107 49.5
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.3e-20 103.2 64 67.2
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.3e-20 103.2 64 65.6
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.3e-20 103.2 103 51.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.3e-20 103.2 103 53.4
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.7e-20 102.8 109 47.7
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 2.2e-20 102.4 64 68.8
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.2e-20 102.4 64 67.2
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 2.2e-20 102.4 64 67.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.9e-20 102.1 88 54.5
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 3.8e-20 101.7 107 47.7
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.8e-20 101.7 103 50.5
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 3.8e-20 101.7 110 47.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 5.0e-20 101.3 107 47.7
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 6.5e-20 100.9 109 45.9
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 6.5e-20 100.9 64 65.6
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 6.5e-20 100.9 109 47.7
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 8.5e-20 100.5 64 64.1
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-19 100.1 64 64.1
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.5e-19 99.8 109 46.8
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.5e-19 99.8 64 62.5
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.9e-19 99.4 81 53.1
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.9e-19 99.4 103 46.6
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.5e-19 99.0 64 64.1
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.5e-19 99.0 88 52.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.5e-19 99.0 64 64.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 2.5e-19 99.0 64 60.9
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 3.2e-19 98.6 64 59.4
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 3.2e-19 98.6 64 65.6
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 4.2e-19 98.2 103 48.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 4.2e-19 98.2 109 47.7
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.5e-19 97.8 64 59.4
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.5e-19 97.8 103 45.6
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 5.5e-19 97.8 103 48.5
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.5e-19 97.8 88 52.3
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.5e-19 97.8 88 52.3
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 5.5e-19 97.8 106 46.2
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 5.5e-19 97.8 64 64.1
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 7.2e-19 97.4 106 45.3
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 7.2e-19 97.4 108 47.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.2e-19 97.4 64 64.1
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.4e-19 97.1 63 65.1
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 9.4e-19 97.1 101 48.5
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 9.4e-19 97.1 64 64.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.2e-18 96.7 64 62.5
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.2e-18 96.7 103 48.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.2e-18 96.7 64 64.1
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.2e-18 96.7 103 49.5
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.2e-18 96.7 109 43.1
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.6e-18 96.3 64 64.1
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.1e-18 95.9 103 46.6
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.7e-18 95.5 64 59.4
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 2.7e-18 95.5 64 62.5
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.7e-18 95.5 64 57.8
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 2.7e-18 95.5 64 60.9
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.6e-18 95.1 81 53.1
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.6e-18 95.1 64 62.5
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 3.6e-18 95.1 64 62.5
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 4.7e-18 94.7 107 46.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 4.7e-18 94.7 64 62.5
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 4.7e-18 94.7 103 47.6
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.7e-18 94.7 64 59.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.1e-18 94.4 64 62.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 8.0e-18 94.0 108 44.4
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.0e-18 94.0 64 57.8
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 1.0e-17 93.6 64 59.4
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.0e-17 93.6 103 48.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.4e-17 93.2 64 60.9
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 1.4e-17 93.2 106 44.3
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.8e-17 92.8 63 65.1
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 2.3e-17 92.4 64 60.9
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 2.3e-17 92.4 64 56.2
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.0e-17 92.0 106 43.4
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 4.0e-17 91.7 103 46.6
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 5.2e-17 91.3 64 60.9
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 6.7e-17 90.9 108 40.7
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 6.7e-17 90.9 60 60.0
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 6.7e-17 90.9 109 45.0
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.2e-16 90.1 64 60.9
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 1.2e-16 90.1 64 57.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.5e-16 89.7 63 61.9
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.0e-16 89.4 64 54.7
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 2.0e-16 89.4 64 54.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.0e-16 89.4 64 57.8
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.0e-16 89.4 109 41.3
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 2.0e-16 89.4 64 53.1
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.0e-16 89.4 106 45.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.6e-16 89.0 64 56.2
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 2.6e-16 89.0 88 48.9
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 2.6e-16 89.0 63 61.9
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 3.3e-16 88.6 64 54.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 3.3e-16 88.6 64 54.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.3e-16 88.6 64 60.9
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 3.3e-16 88.6 64 59.4
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.3e-16 88.6 64 59.4
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.4e-16 88.2 64 54.7
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.4e-16 88.2 64 57.8
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 5.7e-16 87.8 64 56.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.7e-16 87.8 105 41.9
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 5.7e-16 87.8 106 41.5
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 7.5e-16 87.4 64 54.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 9.7e-16 87.0 109 40.4
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 9.7e-16 87.0 64 57.8
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-15 86.7 64 56.2
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.7e-15 86.3 105 42.9
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.2e-15 85.9 64 57.8
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.8e-15 85.5 64 56.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 4.8e-15 84.7 63 55.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 4.8e-15 84.7 63 52.4
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 6.3e-15 84.3 103 46.6
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.1e-14 83.6 64 54.7
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.4e-14 83.2 103 44.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.4e-14 83.2 64 54.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.4e-14 82.4 64 54.7
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.4e-14 82.4 105 41.0
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.4e-14 82.4 64 51.6
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 3.1e-14 82.0 105 40.0
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.6e-13 79.7 64 48.4
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 2.0e-13 79.3 64 56.2
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 7.7e-13 77.4 64 53.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 7.7e-13 77.4 91 44.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.3e-12 76.6 48 66.7
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.9e-12 75.5 56 51.8
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 2.9e-12 75.5 64 50.0
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 8.5e-12 73.9 55 58.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.9e-11 72.8 60 53.3
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 2.1e-10 69.3 63 49.2
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 3.6e-10 68.6 51 52.9
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.8e-09 66.2 44 61.4
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 4.0e-09 65.1 63 42.9
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 5.2e-09 64.7 97 37.1
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.3e-07 60.1 32 68.8
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.1e-06 57.0 53 39.6
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 4.1e-06 55.1 56 44.6


User provided reference genes

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