Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.7e-76 288.9 180 100.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-31 140.2 170 50.0
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 4.5e-31 138.7 161 48.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.7e-31 137.9 168 50.0
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.7e-30 136.7 149 59.7
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.9e-30 136.0 146 54.1
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.9e-30 136.0 165 50.3
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.9e-30 136.0 145 55.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.8e-30 135.6 146 52.1
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.8e-30 135.6 154 53.9
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 3.8e-30 135.6 151 53.6
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 6.5e-30 134.8 148 54.7
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 6.5e-30 134.8 162 50.0
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.6e-30 134.4 164 50.0
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 8.6e-30 134.4 175 46.3
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.9e-29 133.3 146 56.8
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.9e-29 133.3 152 52.0
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.5e-29 132.9 152 52.6
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.5e-29 132.9 168 50.0
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.5e-29 132.9 157 52.2
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.2e-29 132.5 146 55.5
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.2e-29 132.5 175 48.6
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.2e-29 132.1 161 50.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.2e-29 132.1 183 45.4
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.5e-29 131.7 145 54.5
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 5.5e-29 131.7 149 53.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.5e-29 131.7 143 53.1
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 5.5e-29 131.7 150 52.7
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.5e-29 131.7 168 51.2
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.2e-29 131.3 154 52.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 9.5e-29 131.0 154 51.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.5e-29 131.0 165 51.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 9.5e-29 131.0 151 51.7
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 9.5e-29 131.0 146 52.7
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.6e-28 130.2 146 51.4
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.1e-28 129.8 149 53.0
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.1e-28 129.8 164 50.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.8e-28 129.4 164 51.8
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.8e-28 129.4 143 52.4
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.6e-28 129.0 149 53.7
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 6.1e-28 128.3 160 50.0
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 6.1e-28 128.3 150 50.7
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 8.0e-28 127.9 161 47.8
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.0e-27 127.5 157 50.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.0e-27 127.5 157 50.3
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.0e-27 127.5 157 50.3
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.0e-27 127.5 157 50.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.0e-27 127.5 157 50.3
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-27 127.5 143 52.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.8e-27 126.7 153 49.7
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 2.3e-27 126.3 154 50.0
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.3e-27 126.3 153 49.7
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.0e-27 125.6 150 50.7
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.0e-27 125.6 175 48.6
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 6.8e-27 124.8 175 45.1
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.8e-27 124.8 146 50.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 8.8e-27 124.4 164 49.4
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.2e-26 124.0 151 58.9
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.5e-26 123.6 169 47.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.5e-26 123.6 172 45.3
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.6e-26 122.9 176 46.0
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 4.4e-26 122.1 154 49.4
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.5e-26 121.3 167 47.9
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 9.8e-26 120.9 142 57.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-25 119.4 162 48.8
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 3.7e-25 119.0 169 46.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 3.7e-25 119.0 167 47.9
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 3.7e-25 119.0 162 48.8
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.7e-25 119.0 154 50.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 8.3e-25 117.9 165 49.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-24 117.5 146 51.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-24 117.5 154 50.0
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.4e-24 117.1 161 53.4
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.8e-24 116.7 184 43.5
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.1e-24 115.5 125 52.8
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 7.0e-24 114.8 145 48.3
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.0e-24 114.8 153 46.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 7.0e-24 114.8 160 48.1
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.2e-24 114.4 175 48.0
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.2e-23 114.0 160 45.0
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.2e-23 114.0 155 49.7
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.2e-23 114.0 137 50.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.6e-23 113.6 141 50.4
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.0e-23 113.2 143 46.9
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.5e-23 112.5 166 44.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.0e-22 110.9 173 48.0
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.7e-22 110.2 148 53.4
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 2.3e-22 109.8 150 50.7
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 5.0e-22 108.6 151 45.0
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.6e-22 108.2 185 42.7
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 8.6e-22 107.8 167 44.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 8.6e-22 107.8 167 55.1
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.1e-21 107.5 147 49.7
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.3e-21 105.9 141 50.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.6e-21 105.1 163 44.8
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 7.3e-21 104.8 166 48.2
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.2e-20 104.0 74 75.7
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-20 103.6 146 44.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-20 103.6 146 44.5
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.1e-20 103.2 162 45.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.1e-20 103.2 150 43.3
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 4.7e-20 102.1 145 44.8
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.1e-20 101.7 160 45.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 8.0e-20 101.3 145 47.6
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.0e-19 100.9 179 40.2
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.0e-19 100.9 161 44.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.0e-19 100.9 143 51.7
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.8e-19 100.1 154 47.4
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.8e-19 100.1 150 45.3
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.8e-19 100.1 172 40.1
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.3e-19 99.8 162 43.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 4.0e-19 99.0 68 75.0
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-18 95.9 133 45.1
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 7.5e-18 94.7 176 38.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.9e-17 92.0 176 37.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.1e-16 90.9 142 45.8
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.4e-16 90.5 69 71.0
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.8e-16 90.1 150 47.3
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.1e-16 89.0 136 44.1
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 9.2e-16 87.8 148 41.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 9.2e-16 87.8 181 38.7
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.6e-15 87.0 184 46.7
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.6e-15 87.0 71 69.0
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.7e-15 86.3 151 41.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.6e-15 85.5 145 42.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.0e-14 82.8 161 37.3
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.0e-14 82.8 140 43.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.6e-14 81.6 187 36.9
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-13 80.1 155 41.9
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.2e-12 77.4 168 38.7
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.6e-12 77.0 68 64.7
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-12 76.6 167 38.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.1e-12 76.6 146 38.4
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.8e-12 76.3 171 40.4
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.6e-12 75.9 123 39.0
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-11 74.3 155 41.3
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.3e-11 73.2 119 42.0
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.1e-11 72.8 138 43.5
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.8e-11 71.6 188 33.0
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.9e-11 71.2 167 38.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.2e-10 70.9 123 37.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-10 70.9 182 34.1
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-09 67.4 141 41.8
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.7e-09 67.0 143 40.6
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 4.9e-09 65.5 103 41.7
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 8.3e-09 64.7 143 40.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-08 64.3 157 36.9
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 3.2e-08 62.8 143 49.7
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.2e-08 62.8 169 33.7
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 9.2e-08 61.2 69 55.1
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.9e-06 55.8 57 57.9


User provided reference genes

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