Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-54 216.1 117 100.0
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.3e-52 208.8 117 94.9
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.3e-51 204.9 117 89.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.7e-21 104.8 90 58.9
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 6.2e-21 104.4 114 49.1
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 6.2e-21 104.4 111 51.4
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.1e-20 103.6 110 47.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.8e-20 102.8 110 49.1
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.8e-20 102.8 111 51.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 2.3e-20 102.4 110 50.0
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 4.0e-20 101.7 114 49.1
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 5.2e-20 101.3 107 52.3
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 8.9e-20 100.5 107 50.5
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.0e-19 99.4 92 55.4
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 2.6e-19 99.0 109 48.6
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.4e-19 98.6 92 55.4
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 5.8e-19 97.8 119 47.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 5.8e-19 97.8 85 56.5
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.3e-18 96.7 110 49.1
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.7e-18 96.3 114 48.2
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 2.2e-18 95.9 105 51.4
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.9e-18 95.5 92 54.3
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.9e-18 95.5 91 53.8
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.9e-18 94.7 106 50.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 8.3e-18 94.0 106 48.1
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 1.1e-17 93.6 112 49.1
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.9e-17 92.8 98 50.0
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.4e-17 92.4 101 48.5
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-17 92.4 118 47.5
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.4e-17 92.4 118 47.5
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.4e-17 92.4 112 50.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 4.1e-17 91.7 112 47.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.4e-17 91.3 87 56.3
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.4e-17 91.3 87 56.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 5.4e-17 91.3 101 49.5
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.0e-17 90.9 86 52.3
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.2e-16 90.1 101 50.5
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.2e-16 90.1 95 50.5
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.6e-16 89.7 111 49.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.1e-16 89.4 106 48.1
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 2.7e-16 89.0 94 48.9
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.5e-16 88.6 86 53.5
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.6e-16 88.2 106 47.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 4.6e-16 88.2 89 53.9
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 4.6e-16 88.2 89 53.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 7.8e-16 87.4 101 48.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.0e-15 87.0 101 47.5
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-15 87.0 94 47.9
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.0e-15 87.0 111 45.0
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.3e-15 86.7 103 45.6
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.3e-15 86.7 92 48.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.3e-15 86.7 92 48.9
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.7e-15 86.3 104 45.2
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.7e-15 86.3 104 45.2
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.3e-15 85.9 92 51.1
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.3e-15 85.9 96 47.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 3.0e-15 85.5 106 46.2
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.9e-15 85.1 94 48.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 3.9e-15 85.1 112 46.4
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 5.1e-15 84.7 116 44.0
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 5.1e-15 84.7 113 44.2
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 5.1e-15 84.7 96 53.1
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.6e-15 84.3 80 51.2
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.6e-15 84.3 96 46.9
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.6e-15 84.0 80 50.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.1e-14 83.6 92 51.1
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.1e-14 83.6 98 50.0
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.5e-14 83.2 99 45.5
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-14 83.2 109 45.9
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 1.5e-14 83.2 106 44.3
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 3.3e-14 82.0 78 51.3
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 3.3e-14 82.0 101 44.6
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 3.3e-14 82.0 81 49.4
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.3e-14 80.9 86 46.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.5e-14 80.5 80 50.0
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.6e-13 79.7 107 47.7
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.6e-13 79.7 92 51.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.6e-13 79.7 82 54.9
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 2.1e-13 79.3 109 44.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 4.7e-13 78.2 88 47.7
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 4.7e-13 78.2 116 40.5
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 4.7e-13 78.2 106 42.5
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.2e-13 77.8 81 49.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 6.2e-13 77.8 103 44.7
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 8.1e-13 77.4 87 46.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.1e-12 77.0 108 40.7
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 1.4e-12 76.6 95 41.1
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.8e-12 76.3 95 45.3
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.3e-12 75.9 108 44.4
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 2.3e-12 75.9 103 37.9
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.1e-12 75.5 62 56.5
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.1e-12 75.5 86 45.3
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.1e-12 75.5 81 48.1
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 4.0e-12 75.1 104 41.3
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.8e-12 74.3 62 54.8
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 6.8e-12 74.3 102 41.2
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.9e-12 73.9 62 56.5
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.5e-11 73.2 80 47.5
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 4.4e-11 71.6 111 40.5
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.8e-11 71.2 99 41.4
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 5.8e-11 71.2 89 40.4
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 9.9e-11 70.5 105 36.2
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 9.9e-11 70.5 101 43.6
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 9.9e-11 70.5 86 46.5
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 1.7e-10 69.7 101 40.6
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.2e-10 69.3 66 56.1
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.2e-10 69.3 66 56.1
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 2.2e-10 69.3 64 50.0
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 3.7e-10 68.6 89 39.3
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 3.7e-10 68.6 89 39.3
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 4.9e-10 68.2 89 40.4
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 6.4e-10 67.8 89 39.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.1e-09 67.0 100 37.0
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.1e-09 67.0 69 47.8
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.4e-09 66.6 100 36.0
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.4e-09 66.6 99 41.4
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 1.9e-09 66.2 89 39.3
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 2.4e-09 65.9 86 43.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.4e-09 65.9 78 47.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 4.1e-09 65.1 86 38.4
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.1e-09 65.1 79 48.1
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 7.1e-09 64.3 89 37.1
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 7.1e-09 64.3 89 37.1
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.2e-08 63.5 69 49.3
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 1.2e-08 63.5 101 37.6
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 1.6e-08 63.2 69 49.3
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 2.7e-08 62.4 107 37.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 2.7e-08 62.4 74 45.9
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 2.7e-08 62.4 74 45.9
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 2.7e-08 62.4 107 37.4
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.7e-08 62.4 74 43.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.7e-08 62.4 87 42.5
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 3.5e-08 62.0 74 44.6
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.5e-08 62.0 89 37.1
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 3.5e-08 62.0 74 44.6
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.5e-08 62.0 89 37.1
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 4.6e-08 61.6 84 41.7
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 4.6e-08 61.6 75 45.3
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 4.6e-08 61.6 75 45.3
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 6.0e-08 61.2 69 47.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 6.0e-08 61.2 107 37.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 6.0e-08 61.2 87 44.8
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 7.8e-08 60.8 67 49.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 7.8e-08 60.8 87 46.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.0e-07 60.5 69 47.8
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 1.0e-07 60.5 69 49.3
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 1.0e-07 60.5 69 49.3
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 1.0e-07 60.5 69 49.3
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.3e-07 60.1 68 47.1
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.3e-07 59.3 73 53.4
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 5.1e-07 58.2 68 45.6
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 8.6e-07 57.4 66 40.9
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 1.5e-06 56.6 90 37.8
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.5e-06 56.6 66 47.0
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.9e-06 56.2 73 41.1
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 4.3e-06 55.1 92 40.2
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.3e-06 55.1 73 41.1
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.3e-06 55.1 73 41.1
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.3e-06 55.1 73 41.1
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 5.6e-06 54.7 90 37.8


User provided reference genes

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