Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01303 Eucalyptus grandis HOM05D006604 ORTHO05D007974 3.9e-54 214.5 107 100.0
CAN.G659.3 Capsicum annuum HOM05D006604 ORTHO05D007974 7.4e-13 77.4 56 64.3
EL10Ac2g04656 Beta vulgaris HOM05D001314 ORTHO05D001165 2.1e-12 75.9 91 49.5
Nitab4.5_0002404g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 2.8e-12 75.5 41 85.4
FAN20G1951 Fragaria x ananassa HOM05D006604 ORTHO05D007974 3.7e-12 75.1 56 62.5
PGR028G0012 Punica granatum HOM05D006604 ORTHO05D007974 3.7e-12 75.1 82 48.8
Sed0019535 Sechium edule HOM05D006604 ORTHO05D007974 3.7e-12 75.1 82 47.6
CsaV3_UNG209110 Cucumis sativus L. HOM05D006604 ORTHO05D007974 6.2e-12 74.3 40 85.0
HanXRQMTg0579671 Helianthus annuus HOM05D006604 ORTHO05D007974 6.2e-12 74.3 82 51.2
Lsat_1_v5_gn_5_16121 Lactuca sativa HOM05D006604 ORTHO05D007974 6.2e-12 74.3 82 51.2
SHI41364 Sapria himalayana HOM05D006604 ORTHO05D007974 6.2e-12 74.3 40 82.5
SHI42031 Sapria himalayana HOM05D006604 ORTHO05D007974 6.2e-12 74.3 40 82.5
arahy.Tifrunner.gnm1.ann1.NC5V37 Arachis hypogaea HOM05D006604 ORTHO05D007974 8.2e-12 73.9 72 50.0
CANSAT16G0041 Cannabis sativa HOM05D006604 ORTHO05D007974 8.2e-12 73.9 82 51.2
ClCG00G004290 Citrullus lanatus HOM05D006604 ORTHO05D007974 8.2e-12 73.9 56 60.7
SHI35935 Sapria himalayana HOM05D006604 ORTHO05D007974 1.4e-11 73.2 40 77.5
HanXRQChr13g0388581 Helianthus annuus HOM05D006604 ORTHO05D007974 1.8e-11 72.8 80 51.2
SHI35295 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-11 72.8 40 80.0
SHI51349 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-11 72.8 40 80.0
SHI53023 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-11 72.8 40 80.0
SHI54324 Sapria himalayana HOM05D006604 ORTHO05D007974 1.8e-11 72.8 40 80.0
AT2G07741 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
ATMG00410 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
ATMG01170 Arabidopsis thaliana HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
CARHR282790 Cardamine hirsuta HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
CARHR283400 Cardamine hirsuta HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
HanXRQChr11g0320231 Helianthus annuus HOM05D006604 ORTHO05D007974 2.4e-11 72.4 82 50.0
Lalb_Chr01g0011021 Lupinus albus HOM05D006604 ORTHO05D007974 2.4e-11 72.4 99 44.4
Sp3g25850 Schrenkiella parvula HOM05D006604 ORTHO05D007974 2.4e-11 72.4 91 47.3
BcaB06g27871 Brassica carinata HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
BolSC28t60364H Brassica oleracea HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
BraSC177t45762Z Brassica rapa HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
BraSC48t46229Z Brassica rapa HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
BraSC48t46317Z Brassica rapa HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
BraSC54t46362Z Brassica rapa HOM05D006604 ORTHO05D007974 3.1e-11 72.0 91 46.2
RcHm_v2.0_MTg0498771 Rosa chinensis HOM05D006604 ORTHO05D007974 3.1e-11 72.0 82 46.3
unitig_87.g28014 Utricularia gibba HOM05D006604 ORTHO05D007974 3.1e-11 72.0 39 84.6
SHI35759 Sapria himalayana HOM05D006604 ORTHO05D007974 4.0e-11 71.6 40 77.5
Aqoxy1G02966 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 5.3e-11 71.2 56 58.9
BolC1t03444H Brassica oleracea HOM05D006604 ORTHO05D007974 5.3e-11 71.2 40 75.0
Aa31csc464G30 Aethionema arabicum HOM05D006604 ORTHO05D007974 6.9e-11 70.9 39 79.5
Aqoxy12s025 Aquilegia oxysepala HOM05D006604 ORTHO05D007974 6.9e-11 70.9 56 58.9
DCAR_031658 Daucus carota HOM05D006604 ORTHO05D007974 6.9e-11 70.9 56 58.9
Gorai.001G160500 Gossypium raimondii HOM05D006604 ORTHO05D007974 9.0e-11 70.5 40 80.0
Lalb_Chr00c29g0408041 Lupinus albus HOM05D006604 ORTHO05D007974 1.5e-10 69.7 82 47.6
Os12g0424180 Oryza sativa ssp. japonica HOM05D006604 ORTHO05D007974 1.5e-10 69.7 35 91.4
arahy.Tifrunner.gnm1.ann1.I4ZC3D Arachis hypogaea HOM05D006604 ORTHO05D007974 2.0e-10 69.3 83 45.8
MELO3C034885.2 Cucumis melo HOM05D006604 ORTHO05D007974 2.0e-10 69.3 41 78.0
DCAR_032438 Daucus carota HOM05D006604 ORTHO05D007974 2.0e-10 69.3 99 44.4
arahy.Tifrunner.gnm1.ann1.QPI8J1 Arachis hypogaea HOM05D006604 ORTHO05D007974 3.4e-10 68.6 39 79.5
LjContig00446g0008739 Lotus japonicus HOM05D006604 ORTHO05D007974 3.4e-10 68.6 40 77.5
Nn044s41811 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.4e-10 68.6 40 77.5
Nn1g10085 Nelumbo nucifera HOM05D006604 ORTHO05D007974 3.4e-10 68.6 40 77.5
Nn6g31985 Nelumbo nucifera HOM05D006604 ORTHO05D007974 5.8e-10 67.8 41 75.6
Lj2P1232T107 Lonicera japonica HOM05D006604 ORTHO05D007974 1.0e-09 67.0 56 55.4
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.0e-09 67.0 31 93.5
GSVIVG01023423001 Vitis vinifera HOM05D006604 ORTHO05D007974 1.7e-09 66.2 56 53.6
Nitab4.5_0006806g0110 Nicotiana tabacum HOM05D006604 ORTHO05D007974 4.9e-09 64.7 56 57.1
SHI35478 Sapria himalayana HOM05D006604 ORTHO05D007974 4.9e-09 64.7 40 75.0
SHI01303 Sapria himalayana HOM05D006604 ORTHO05D007974 6.5e-09 64.3 56 58.9
SHI12109 Sapria himalayana HOM05D006604 ORTHO05D007974 6.5e-09 64.3 41 70.7
SGA_v2.0_scaffold245G44658 Striga asiatica HOM05D006604 ORTHO05D007974 1.4e-08 63.2 31 90.3
C01p34770 Brassica napus HOM05D013555 ORTHO05D016062 1.9e-08 62.8 33 75.8
SHI33922 Sapria himalayana HOM05D006604 ORTHO05D007974 5.5e-08 61.2 56 48.2
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 7.1e-08 60.8 73 49.3
Nitab4.5_0005246g0050 Nicotiana tabacum HOM05D006604 ORTHO05D007974 7.1e-08 60.8 91 45.1
Glyma.01G103450 Glycine max HOM05D006604 ORTHO05D007974 9.3e-08 60.5 37 73.0
C01p34870 Brassica napus HOM05D013555 ORTHO05D016062 1.2e-07 60.1 32 75.0
Nitab4.5_0002418g0200 Nicotiana tabacum HOM05D006604 ORTHO05D007974 1.2e-07 60.1 28 89.3
SEGI_09870 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.9e-07 57.4 90 44.4
SEGI_16408 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.9e-07 57.4 90 44.4
SEGI_30085 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.9e-07 57.4 90 44.4
SEGI_38071 Sequoiadendron giganteum HOM05D006604 ORTHO05D007974 7.9e-07 57.4 90 44.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 1.0e-06 57.0 29 89.7
SalBow1G2924 Salvia bowleyana HOM05D006604 ORTHO05D007974 2.3e-06 55.8 82 42.7


User provided reference genes

Program Settings