Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-110 402.9 198 100.0
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.6e-90 335.1 196 86.2
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.2e-90 334.3 196 86.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.2e-90 334.3 196 86.2
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.9e-79 298.9 196 75.0
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.9e-79 298.9 197 74.1
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.4e-78 296.6 196 74.5
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 3.2e-78 295.4 196 73.5
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.2e-78 295.4 195 73.8
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.2e-78 295.0 196 74.5
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 4.2e-78 295.0 195 73.3
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 3.5e-77 292.0 196 73.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 6.0e-77 291.2 196 70.4
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.7e-76 289.7 197 73.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.7e-76 289.7 196 71.4
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.3e-76 289.3 196 72.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.0e-76 288.9 195 71.8
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.1e-75 287.0 196 69.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.9e-75 286.2 196 69.9
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 3.3e-75 285.4 200 71.0
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 7.3e-75 284.3 196 69.9
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.3e-74 283.5 196 67.3
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.8e-74 282.3 195 70.8
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 8.1e-74 280.8 196 68.4
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.1e-74 280.8 196 69.9
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.1e-73 280.4 196 65.3
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.8e-73 279.6 196 70.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-73 279.3 199 69.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.4e-73 279.3 190 72.1
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 3.1e-73 278.9 199 69.8
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.1e-73 278.9 196 67.3
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-73 278.1 196 68.9
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-72 276.9 199 68.3
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.2e-72 276.9 199 68.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.0e-72 276.2 196 67.3
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.0e-72 276.2 196 67.3
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.0e-72 276.2 199 69.3
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.6e-72 275.8 196 67.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 3.4e-72 275.4 198 67.2
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 3.4e-72 275.4 198 67.2
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 7.6e-72 274.2 199 67.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 7.6e-72 274.2 199 67.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 7.6e-72 274.2 199 68.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 7.6e-72 274.2 199 67.8
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 9.9e-72 273.9 199 67.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 2.2e-71 272.7 196 66.3
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 2.2e-71 272.7 200 64.5
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.9e-71 272.3 218 63.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.9e-71 271.6 202 67.8
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 4.9e-71 271.6 213 65.3
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 4.9e-71 271.6 199 67.8
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 4.9e-71 271.6 198 67.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 6.4e-71 271.2 196 66.3
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 6.4e-71 271.2 196 69.4
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 6.4e-71 271.2 197 67.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-70 270.4 200 68.0
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.4e-70 270.0 201 68.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.4e-70 270.0 196 67.3
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.4e-70 269.2 196 66.3
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 3.2e-70 268.9 201 67.7
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 4.2e-70 268.5 200 66.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 5.5e-70 268.1 194 66.5
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.3e-70 267.3 196 66.8
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.2e-69 266.9 196 65.8
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.2e-69 266.9 199 65.8
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.6e-69 266.5 199 64.8
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.7e-69 265.8 196 64.3
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.7e-69 265.8 196 64.3
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 7.9e-69 264.2 199 65.3
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.3e-68 263.5 199 64.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 2.3e-68 262.7 183 70.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.3e-68 262.7 196 65.3
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.1e-68 261.5 196 66.8
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 5.1e-68 261.5 203 61.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 5.1e-68 261.5 197 65.5
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 5.1e-68 261.5 200 64.5
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.1e-67 260.4 202 62.4
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.9e-67 259.6 200 63.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 2.5e-67 259.2 200 64.0
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 3.3e-67 258.8 196 64.3
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.6e-67 258.1 199 64.3
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 5.6e-67 258.1 199 64.3
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 5.6e-67 258.1 198 64.1
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.4e-67 257.7 200 63.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 7.4e-67 257.7 198 64.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.8e-66 255.0 200 61.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 8.1e-66 254.2 198 61.6
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.1e-65 253.8 196 62.8
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-65 253.1 201 64.2
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.9e-65 251.1 196 62.2
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.9e-65 251.1 196 62.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.2e-64 250.4 198 61.6
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.0e-64 249.6 196 61.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.5e-64 248.4 196 61.7
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.5e-64 248.4 196 61.7
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 4.5e-64 248.4 199 62.8
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.6e-64 247.7 205 61.0
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.7e-63 246.5 198 61.6
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.8e-63 245.4 195 63.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.8e-63 245.4 195 63.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 8.4e-63 244.2 198 60.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.4e-63 244.2 196 67.9
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-62 243.8 195 63.1
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.1e-62 243.8 196 60.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.4e-62 243.4 198 61.6
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 4.6e-61 238.4 237 53.2
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 3.9e-60 235.3 197 57.4
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.3e-58 230.3 198 58.1
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.2e-56 223.8 161 66.5
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 4.5e-56 221.9 196 56.1
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 7.6e-56 221.1 200 55.0
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.3e-55 220.3 204 57.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.9e-55 219.2 234 51.3
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-54 217.2 209 57.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.1e-53 211.5 155 67.7
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.3e-52 209.5 199 56.8
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.8e-50 202.6 153 64.1
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.1e-49 198.7 196 49.0
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.2e-48 197.2 191 55.5
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.5e-48 195.3 192 51.6
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.4e-44 183.7 138 65.9
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.8e-42 175.3 152 53.3
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.5e-40 170.2 201 45.8
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.0e-39 167.5 185 44.3
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.9e-39 166.0 157 53.5
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.1e-38 164.1 196 41.3
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.4e-38 163.7 196 42.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 7.0e-33 144.8 118 62.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.0e-31 141.0 90 73.3
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.1e-30 137.5 121 58.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.7e-29 132.9 166 41.6
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.0e-27 126.7 114 58.8
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-24 116.3 99 59.6
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.7e-23 113.6 177 37.3
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.5e-22 109.8 75 69.3
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 5.5e-22 108.6 71 73.2
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.4e-20 104.0 115 47.0
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.4e-19 99.0 68 67.6
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.3e-18 97.4 75 58.7
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 6.3e-18 95.1 173 35.3
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 2.7e-13 79.7 58 67.2
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-11 74.3 60 58.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.2e-08 64.3 45 64.4


User provided reference genes

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