Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.7e-91 338.2 170 100.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.2e-70 270.0 174 78.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.7e-70 268.1 175 76.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.4e-69 266.5 170 77.1
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 4.0e-69 265.0 171 78.9
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 5.2e-69 264.6 165 77.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.8e-69 264.2 166 77.1
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.0e-68 262.7 165 77.0
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 7.5e-68 260.8 174 74.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.7e-67 259.6 165 76.4
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.8e-67 258.8 174 74.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 2.8e-67 258.8 178 73.6
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 3.7e-67 258.5 170 73.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.7e-67 258.5 166 77.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.7e-67 258.5 162 77.2
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 4.8e-67 258.1 176 72.7
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.8e-67 258.1 174 74.7
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.3e-67 257.7 165 76.4
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 8.3e-67 257.3 174 75.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 8.3e-67 257.3 174 73.6
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.1e-66 256.9 164 76.2
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.4e-66 256.5 174 73.0
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.8e-66 256.1 174 74.1
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 176 74.4
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.4e-66 255.8 178 73.6
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 3.1e-66 255.4 174 74.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.1e-66 255.4 162 75.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.1e-66 255.4 178 73.6
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.1e-66 255.0 174 72.4
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 5.4e-66 254.6 174 74.1
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 7.0e-66 254.2 175 74.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 7.0e-66 254.2 177 74.0
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-66 254.2 174 73.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-66 254.2 174 73.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 7.0e-66 254.2 174 73.6
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 7.0e-66 254.2 174 74.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 9.1e-66 253.8 173 74.6
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 73.6
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.6e-65 253.1 177 73.4
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.0e-65 252.7 164 75.0
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.0e-65 252.7 174 73.6
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.0e-65 252.7 175 73.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.7e-65 252.3 172 73.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 2.7e-65 252.3 172 72.7
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.7e-65 252.3 172 73.3
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-65 251.9 164 73.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 3.5e-65 251.9 183 71.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.5e-65 251.9 175 73.1
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 73.5
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.5e-65 251.9 178 72.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 3.5e-65 251.9 175 73.1
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 4.5e-65 251.5 170 72.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.7e-65 250.8 174 70.7
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 7.7e-65 250.8 182 70.3
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.0e-64 250.4 168 73.2
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.3e-64 250.0 164 73.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.3e-64 250.0 164 73.8
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.3e-64 250.0 170 72.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 73.0
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 73.0
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.7e-64 249.6 174 72.4
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.7e-64 249.6 165 75.2
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.7e-64 249.6 164 73.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-64 249.2 164 73.2
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.2e-64 249.2 164 74.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.9e-64 248.8 164 73.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.9e-64 248.8 174 69.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.8e-64 248.4 164 73.2
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-64 248.4 164 73.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.8e-64 248.4 164 73.2
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 3.8e-64 248.4 169 74.0
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 5.0e-64 248.1 164 72.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 5.0e-64 248.1 174 69.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.1e-63 246.9 174 72.4
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.1e-63 246.9 174 70.7
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.5e-63 246.5 170 70.6
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.9e-63 246.1 174 71.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.9e-63 246.1 174 71.8
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 1.9e-63 246.1 164 73.8
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 4.2e-63 245.0 164 73.2
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 2.7e-62 242.3 164 72.6
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-62 242.3 174 69.5
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 3.6e-62 241.9 176 71.6
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 3.6e-62 241.9 172 71.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 4.7e-62 241.5 164 72.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 4.7e-62 241.5 164 72.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 8.0e-62 240.7 173 69.9
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.0e-61 240.4 174 69.5
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.0e-61 240.4 164 73.2
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-61 239.6 203 63.5
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-61 239.6 203 63.5
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.8e-61 239.6 203 63.5
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.0e-61 238.4 198 65.2
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 5.2e-61 238.0 177 69.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 6.8e-61 237.7 174 67.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.2e-60 236.9 174 67.8
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.4e-60 235.3 210 61.0
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.8e-60 233.8 175 64.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.3e-59 233.4 160 73.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.7e-59 233.0 177 68.9
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 8.3e-59 230.7 178 68.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.1e-58 230.3 163 69.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.2e-57 226.9 218 57.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 5.0e-56 221.5 161 66.5
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.6e-55 218.0 139 74.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 7.3e-55 217.6 228 53.9
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 7.3e-55 217.6 164 64.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.6e-54 216.5 163 64.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 5.2e-53 211.5 168 63.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.0e-52 209.5 196 62.2
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.6e-52 209.1 145 72.4
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 2.6e-52 209.1 266 47.0
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.5e-52 207.6 212 56.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.2e-50 202.2 170 61.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.0e-48 197.2 187 57.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 3.3e-47 192.2 120 75.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 5.2e-45 184.9 113 77.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 3.0e-40 169.1 174 56.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.6e-38 162.2 164 52.4
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 4.0e-37 158.7 113 63.7
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 5.8e-36 154.8 120 68.3
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 2.9e-35 152.5 116 61.2
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.5e-33 145.6 112 66.1
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.8e-33 144.4 141 47.5
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.0e-32 144.1 110 70.9
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-32 143.7 101 70.3
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 5.1e-32 141.7 140 45.0
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 9.5e-31 137.5 99 72.7
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.2e-28 130.6 119 59.7
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 2.9e-27 125.9 94 70.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.9e-26 123.2 101 60.4
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 5.4e-26 121.7 74 74.3
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 5.4e-26 121.7 74 74.3
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 5.4e-26 121.7 103 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.5e-23 113.6 131 40.5
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 6.2e-22 108.2 63 81.0
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.4e-21 107.1 61 83.6
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 4.0e-21 105.5 85 67.1
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.9e-21 104.8 123 50.4
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 8.9e-21 104.4 106 42.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 8.9e-21 104.4 64 76.6
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.9e-20 100.9 93 57.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 4.9e-19 98.6 65 67.7
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 9.3e-18 94.4 104 39.4
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 2.1e-17 93.2 58 72.4
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.3e-16 89.7 106 40.6
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 2.3e-16 89.7 88 47.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 9.6e-15 84.3 136 35.3
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.8e-14 82.0 47 78.7
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.9e-13 78.2 104 45.2
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 3.7e-06 55.8 32 81.2


User provided reference genes

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