Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 4137.0 2158 100.0
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2452.6 2184 61.3
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2428.3 2176 61.1
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2426.4 2173 61.7
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2377.8 2183 61.0
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2372.0 2179 60.1
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2355.9 2204 59.3
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2341.6 2172 60.3
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2339.3 2177 60.9
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2331.2 2181 59.5
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2322.7 2194 59.7
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2321.6 2172 60.2
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2320.8 2175 60.2
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2320.4 2196 58.3
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2319.7 2187 59.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2317.7 2178 60.3
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2311.2 2192 59.6
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2310.4 2173 58.8
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2308.5 2175 59.8
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2297.7 2207 58.1
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2295.0 2177 60.3
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2288.8 2269 57.6
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2242.6 2170 57.5
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2233.8 2178 57.2
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2226.1 2173 57.1
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2224.9 2177 57.4
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2215.3 2180 57.2
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2207.2 2176 56.7
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2200.6 2179 57.1
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2197.5 2177 57.0
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2197.2 2177 57.5
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2195.2 2180 57.1
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2189.1 2177 57.1
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2114.3 2203 54.9
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2111.6 2178 54.7
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2109.7 2175 54.8
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2100.5 2187 54.6
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2098.2 2189 53.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2094.3 2170 55.3
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2093.9 2199 53.8
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2080.8 2195 54.6
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2079.3 2026 56.1
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2058.9 2090 54.9
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2048.5 2185 53.7
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2034.6 2189 52.9
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 2028.1 2177 53.7
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2026.5 1959 58.8
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2022.3 2260 52.6
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 2013.4 2098 54.5
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1982.6 2057 55.3
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1980.3 2166 52.7
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1958.3 2148 52.7
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1917.5 2277 49.5
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1886.3 2137 50.7
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1885.2 1885 57.0
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1870.9 1886 56.8
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1866.3 2186 50.4
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1856.6 2162 50.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1830.1 1903 55.0
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1809.7 2261 48.0
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1799.6 2184 49.5
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1792.3 1541 61.8
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1791.9 2197 50.3
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1789.6 1681 58.7
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1761.9 2124 49.1
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1742.2 2025 50.8
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1723.4 1965 51.5
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1715.3 1864 52.7
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1713.0 1997 50.6
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1713.0 2099 48.5
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1569.7 1983 45.5
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1470.7 1747 49.6
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1434.5 1676 50.5
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1385.5 1798 45.2
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1369.4 2304 40.3
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1361.7 1708 48.2
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1355.9 1121 64.5
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1342.8 1691 48.5
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1336.6 1700 47.5
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1307.7 1562 50.2
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1210.3 1965 39.1
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1203.3 2261 37.7
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 5.2e-299 1032.3 1144 52.9
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 1.5e-298 1030.8 949 58.7
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 7.5e-298 1028.5 1029 57.9
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 1.2e-295 1021.1 1306 46.3
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 6.0e-287 992.3 1008 54.6
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 4.6e-271 939.5 1122 51.2
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 7.1e-256 889.0 979 51.1
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.1e-251 875.2 1380 39.7
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.6e-223 781.6 2724 28.5
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 4.5e-210 736.9 506 74.3
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.6e-202 711.8 880 46.8
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 1.6e-199 701.8 1451 33.5
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 2.3e-198 698.0 634 57.1
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 2.7e-186 657.9 504 66.9
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 3.1e-150 538.1 569 59.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.2e-138 499.6 412 63.3
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.3e-137 496.1 378 66.9
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.3e-111 409.8 342 64.3
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 2.6e-109 402.1 406 55.2
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 3.8e-108 398.3 406 54.7
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 1.7e-103 382.9 351 60.1
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-99 369.8 220 81.8
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.8e-94 352.8 216 78.2
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 1.8e-89 336.3 230 72.2
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 6.3e-87 327.8 342 55.8
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 3.5e-85 322.0 182 85.2
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 5.7e-72 278.1 551 36.7
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.7e-71 276.6 307 64.2
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 3.7e-71 275.4 381 54.6
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 2.4e-70 272.7 348 57.8
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 6.6e-60 238.0 128 87.5
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.3e-57 229.6 232 52.2
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 4.1e-54 218.8 257 52.9
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 3.0e-52 212.6 169 70.4
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 8.6e-52 211.1 148 70.3
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 5.6e-51 208.4 169 68.6
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 1.2e-50 207.2 183 71.0
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.3e-43 182.6 120 75.0
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.3e-43 182.2 120 75.0
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 7.6e-40 171.4 142 69.0
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.0e-32 146.7 73 90.4
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.0e-32 146.7 73 90.4
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 4.4e-32 145.6 133 54.1
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 9.9e-32 144.4 212 43.9
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.2e-31 143.3 338 45.0
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.2e-31 143.3 95 71.6
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 4.6e-29 135.6 162 48.8
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.4e-25 124.0 64 87.5
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 5.3e-25 122.1 199 47.2
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 6.4e-23 115.2 85 67.1
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.2e-22 112.8 383 39.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.1e-19 104.4 57 82.5
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 3.7e-18 99.4 55 83.6
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 1.1e-17 97.8 65 69.2
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 1.8e-17 97.1 53 84.9
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 5.3e-17 95.5 79 62.0
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 4.9e-15 89.0 150 37.3
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.8e-12 80.5 82 76.8
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 5.1e-12 79.0 92 51.1
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 6.2e-10 72.0 55 67.3
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 4.0e-09 69.3 55 60.0
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 9.0e-09 68.2 47 66.0
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 2.5e-06 60.1 51 54.9
Haze_15793 Corylus avellana HOM05D004910 ORTHO05D006864 3.2e-06 59.7 36 72.2
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 9.3e-06 58.2 50 58.0
Psat7g121640 Pisum sativum HOM05D004910 ORTHO05D030483 9.3e-06 58.2 108 38.0


User provided reference genes

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