Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 7.7e-77 290.4 148 100.0
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 4.7e-58 228.0 148 75.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.0e-57 226.9 162 72.8
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.4e-57 226.5 146 75.3
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 4.0e-57 224.9 158 72.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 5.2e-57 224.6 158 72.8
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 6.7e-57 224.2 148 75.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.5e-56 223.0 166 69.9
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.4e-56 221.5 146 74.7
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.7e-56 221.1 162 70.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 7.5e-56 220.7 164 68.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 7.5e-56 220.7 152 74.3
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 9.7e-56 220.3 157 73.2
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.3e-55 219.9 148 75.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.7e-55 219.5 168 66.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.8e-55 218.8 148 72.3
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 8.2e-55 217.2 172 66.3
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 8.2e-55 217.2 155 72.3
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 8.2e-55 217.2 177 64.4
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.4e-54 216.5 146 72.6
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.4e-54 216.5 155 71.0
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.4e-54 216.5 178 65.2
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.8e-54 216.1 156 70.5
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.4e-54 215.7 166 66.9
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 3.1e-54 215.3 158 69.0
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 4.1e-54 214.9 157 69.4
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.3e-54 214.5 178 64.6
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 7.0e-54 214.2 168 66.7
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 7.0e-54 214.2 180 62.8
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.1e-54 213.8 169 66.3
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 9.1e-54 213.8 158 69.0
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 9.1e-54 213.8 155 70.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.6e-53 213.0 145 71.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.7e-53 212.2 177 62.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.5e-53 211.8 173 64.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.5e-53 211.8 157 68.2
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 4.5e-53 211.5 145 69.7
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 5.9e-53 211.1 150 71.3
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.9e-53 211.1 158 67.7
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.0e-52 210.3 158 67.7
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.0e-52 210.3 155 67.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.3e-52 209.9 174 63.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.8e-52 208.4 193 58.0
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 8.5e-52 207.2 154 68.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 8.5e-52 207.2 163 66.3
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.1e-51 206.8 155 69.0
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.9e-51 206.1 177 62.1
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.2e-51 205.3 156 66.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.5e-51 204.5 174 62.1
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.2e-50 203.4 154 66.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-50 203.4 141 71.6
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.7e-50 202.2 153 66.7
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.7e-50 202.2 153 66.7
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.7e-50 202.2 153 66.7
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 3.6e-50 201.8 150 68.0
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 4.7e-50 201.4 148 70.3
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 6.1e-50 201.1 153 66.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.1e-50 201.1 153 66.0
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 8.0e-50 200.7 153 67.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 8.0e-50 200.7 148 66.9
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.4e-49 199.9 150 66.7
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.4e-49 199.9 150 68.0
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.8e-49 199.5 148 67.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 1.8e-49 199.5 188 59.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.0e-49 198.7 170 61.8
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 4.0e-49 198.4 207 53.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 8.8e-49 197.2 159 63.5
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.5e-48 196.4 148 69.6
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.6e-48 195.7 150 66.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.4e-48 195.3 148 69.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.4e-48 194.9 112 88.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.4e-48 194.9 158 62.7
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.7e-47 193.0 199 54.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.7e-47 191.8 216 50.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 2.4e-46 189.1 148 67.6
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.1e-46 188.7 176 58.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.4e-46 188.0 146 67.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.1e-46 187.2 152 61.2
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.6e-45 186.4 159 62.9
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.5e-45 185.3 152 60.5
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 3.5e-45 185.3 140 68.6
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.7e-45 184.1 159 61.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 7.7e-45 184.1 117 79.5
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.9e-44 182.2 162 59.9
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.9e-44 182.2 156 62.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.9e-44 182.2 164 59.8
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.8e-44 181.8 175 55.4
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 5.0e-44 181.4 112 81.2
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 5.0e-44 181.4 126 74.6
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.2e-43 178.3 121 72.7
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 4.2e-43 178.3 148 63.5
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 4.2e-43 178.3 112 80.4
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 9.5e-43 177.2 119 74.8
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-42 176.8 175 56.0
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.6e-42 176.4 110 80.9
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.8e-42 175.6 109 78.0
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.1e-42 174.5 148 61.5
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.0e-42 174.1 109 78.0
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.8e-41 172.9 120 74.2
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.8e-41 172.9 110 79.1
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.6e-40 169.1 112 77.7
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.6e-40 169.1 122 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 3.4e-40 168.7 156 59.0
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 4.4e-40 168.3 113 72.6
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.4e-40 168.3 155 56.1
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 7.5e-40 167.5 112 74.1
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 7.5e-40 167.5 120 72.5
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.4e-38 163.3 128 62.5
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 7.0e-38 161.0 169 55.6
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 9.2e-38 160.6 109 71.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.6e-37 159.8 171 50.3
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.5e-37 158.7 155 58.1
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.8e-37 157.5 108 71.3
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.0e-36 157.1 150 53.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.0e-36 157.1 155 53.5
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-36 157.1 127 64.6
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 2.9e-36 155.6 116 67.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 8.6e-36 154.1 150 52.0
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.5e-35 153.3 112 67.9
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.5e-35 153.3 95 77.9
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 5.2e-33 144.8 164 48.2
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.0e-32 142.9 155 55.5
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.4e-31 137.9 146 56.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 6.4e-31 137.9 149 50.3
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 6.4e-31 137.9 74 85.1
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.9e-30 136.3 151 49.0
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 5.4e-30 134.8 143 55.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.2e-29 133.7 112 58.9
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 2.7e-29 132.5 127 50.4
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.0e-29 131.3 115 62.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.3e-28 129.4 148 52.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 3.1e-25 119.0 105 62.9
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 7.5e-24 114.4 112 60.7
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.9e-23 112.5 70 77.1
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.9e-23 112.5 79 75.9
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.9e-22 109.8 152 44.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.7e-20 103.2 67 76.1
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.6e-20 101.3 68 66.2
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 8.6e-20 100.9 108 50.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.9e-19 99.8 70 71.4
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.6e-18 95.5 80 60.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 6.2e-18 94.7 120 50.0
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.8e-17 93.2 137 43.8
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.8e-17 93.2 119 49.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 8.9e-17 90.9 64 70.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 7.1e-14 81.3 63 60.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.3e-11 72.0 47 66.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 4.7e-10 68.6 150 32.7
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 5.2e-09 65.1 52 63.5
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 3.4e-08 62.4 41 68.3
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.3e-07 60.5 36 75.0
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 2.9e-07 59.3 80 43.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 6.4e-07 58.2 36 75.0
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.4e-07 58.2 36 69.4
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.1e-06 57.4 36 66.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.9e-06 56.6 35 71.4
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.2e-06 55.5 35 68.6
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 5.4e-06 55.1 36 66.7
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.4e-06 55.1 36 66.7
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 7.1e-06 54.7 36 69.4
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 7.1e-06 54.7 36 63.9


User provided reference genes

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