Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.7e-64 248.1 124 100.0
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.5e-49 199.5 112 88.4
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.9e-49 199.1 114 83.3
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 3.3e-49 198.4 121 80.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.7e-49 197.6 125 80.0
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 5.7e-49 197.6 123 79.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.4e-49 197.2 114 82.5
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.4e-49 197.2 124 79.0
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.3e-48 196.4 114 84.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.3e-48 196.4 114 84.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 1.6e-48 196.1 112 83.0
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.2e-48 195.7 116 81.0
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.2e-48 195.7 114 82.5
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.2e-48 195.7 114 84.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.8e-48 195.3 112 83.0
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 3.7e-48 194.9 112 82.1
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-48 194.9 119 81.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.4e-47 192.2 114 82.5
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 5.3e-47 191.0 114 82.5
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 5.3e-47 191.0 115 80.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 5.3e-47 191.0 112 82.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.2e-46 189.9 112 82.1
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.5e-46 189.5 112 82.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.5e-46 189.5 112 82.1
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.5e-46 189.5 112 82.1
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.0e-46 189.1 112 83.9
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.0e-46 189.1 112 81.2
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 3.4e-46 188.3 114 79.8
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.4e-46 188.3 112 82.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 4.5e-46 188.0 112 80.4
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.9e-46 187.6 114 79.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 5.9e-46 187.6 114 78.9
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 7.7e-46 187.2 121 76.0
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.0e-45 186.8 112 79.5
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.3e-45 186.4 110 80.9
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 1.7e-45 186.0 112 80.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.7e-45 186.0 111 80.2
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 2.9e-45 185.3 111 82.0
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.9e-45 185.3 112 79.5
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.9e-45 185.3 114 79.8
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 3.8e-45 184.9 114 78.9
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 3.8e-45 184.9 114 78.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 5.0e-45 184.5 109 81.7
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 6.5e-45 184.1 112 79.5
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 6.5e-45 184.1 114 78.9
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 8.5e-45 183.7 118 75.4
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.9e-44 182.6 115 78.3
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.9e-44 182.6 112 77.7
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.9e-44 182.6 112 77.7
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.9e-44 182.6 112 78.6
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.5e-44 182.2 114 77.2
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 2.5e-44 182.2 111 79.3
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.2e-44 181.4 109 78.0
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 5.5e-44 181.0 120 74.2
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 5.5e-44 181.0 112 76.8
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.5e-44 181.0 114 77.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 9.4e-44 180.3 114 78.1
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.2e-43 179.9 113 77.0
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.2e-43 179.9 110 79.1
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.6e-43 179.5 112 78.6
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.6e-43 179.5 112 75.0
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.1e-43 179.1 111 79.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 6.1e-43 177.6 112 75.9
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 6.1e-43 177.6 112 77.7
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 7.9e-43 177.2 115 75.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 7.9e-43 177.2 112 76.8
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.4e-42 176.4 108 78.7
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.4e-42 176.4 110 75.5
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.8e-42 176.0 112 76.8
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 2.3e-42 175.6 114 76.3
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 3.9e-42 174.9 112 75.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 5.1e-42 174.5 112 74.1
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 6.7e-42 174.1 112 74.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.1e-41 173.3 112 73.2
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.1e-41 173.3 112 73.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.5e-41 172.9 112 73.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.5e-41 172.9 112 73.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.5e-41 172.9 112 73.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 3.3e-41 171.8 112 72.3
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 3.3e-41 171.8 112 72.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.3e-41 171.8 112 74.1
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.3e-41 171.8 111 73.9
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 9.7e-41 170.2 112 73.2
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 9.7e-41 170.2 110 73.6
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.7e-40 168.3 112 75.0
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 6.3e-40 167.5 112 71.4
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 4.1e-39 164.9 114 70.2
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 6.9e-39 164.1 114 70.2
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 9.1e-39 163.7 124 67.7
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.2e-38 163.3 94 85.1
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.4e-38 161.8 114 70.2
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 7.7e-38 160.6 110 72.7
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 7.7e-38 160.6 110 71.8
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.0e-37 160.2 106 76.4
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-37 160.2 114 68.4
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.0e-37 160.2 114 68.4
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.0e-37 160.2 108 72.2
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 1.0e-37 160.2 114 67.5
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.3e-37 159.8 107 72.0
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.7e-37 159.5 114 71.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 3.8e-37 158.3 103 72.8
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.0e-37 157.9 114 64.0
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 6.5e-37 157.5 116 69.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 8.5e-37 157.1 112 67.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 8.5e-37 157.1 110 71.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.2e-36 155.2 91 81.3
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.2e-36 155.2 122 60.7
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 2.1e-35 152.5 94 78.7
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.7e-35 151.4 96 76.0
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.7e-35 151.4 112 64.3
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.7e-35 151.4 114 64.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.0e-34 150.2 112 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 6.7e-34 147.5 112 67.9
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 9.7e-33 143.7 112 60.7
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.7e-32 141.7 112 59.8
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 3.7e-32 141.7 103 67.0
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.7e-32 141.7 76 84.2
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 8.2e-32 140.6 114 65.8
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.3e-31 137.9 112 60.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.6e-30 135.6 111 64.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.5e-30 135.2 112 56.2
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.8e-29 131.7 111 62.2
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.9e-28 129.4 81 74.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.2e-28 128.6 123 51.2
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 5.5e-28 127.9 113 63.7
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 9.4e-28 127.1 127 59.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.4e-26 123.2 111 56.8
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 2.3e-26 122.5 114 61.4
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.7e-24 116.3 69 79.7
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.1e-23 113.6 103 56.3
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.8e-23 112.8 79 73.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.2e-22 110.2 76 63.2
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.0e-22 109.4 70 75.7
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.7e-22 109.0 112 56.2
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.7e-22 107.5 71 73.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 2.2e-21 105.9 90 64.4
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-20 102.1 123 51.2
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.2e-20 101.7 68 66.2
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.2e-20 100.9 124 50.8
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.8e-18 96.3 70 70.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 9.8e-17 90.5 107 50.5
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.3e-16 90.1 62 71.0
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 7.7e-14 80.9 114 42.1
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.1e-11 72.8 55 67.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.6e-11 72.0 47 66.0
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.0e-10 70.5 50 68.0
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 2.8e-08 62.4 37 73.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.1e-07 60.5 113 37.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.4e-07 58.2 42 61.9


User provided reference genes

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