Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 8.1e-174 613.6 305 100.0
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.2e-155 552.4 305 88.5
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 6.1e-153 544.3 305 86.2
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 7.9e-153 543.9 305 86.6
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 7.9e-153 543.9 305 86.2
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.0e-152 543.5 305 85.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 85.2
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 86.9
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.3e-152 542.3 305 85.6
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 3.0e-152 542.0 305 85.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 5.1e-152 541.2 305 87.5
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.7e-152 540.8 305 85.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 1.1e-151 540.0 304 87.8
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.0e-151 539.3 305 85.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 85.6
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 5.7e-151 537.7 305 86.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 9.7e-151 537.0 305 85.6
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 9.7e-151 537.0 305 87.5
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 86.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 85.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 86.2
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 6.3e-150 534.3 305 84.6
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 86.2
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 8.2e-150 533.9 305 85.9
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 86.9
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 85.9
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.9
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.4e-149 532.3 305 86.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 87.2
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 83.9
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 85.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.6
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.2
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 83.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 85.2
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 84.6
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.4e-148 528.5 305 85.2
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 84.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 83.6
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 84.3
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 84.3
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 85.2
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.0e-147 526.9 305 84.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.3e-147 526.6 305 85.2
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 83.9
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 85.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.7e-147 526.2 307 82.7
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 82.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.2e-147 525.8 300 86.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.3
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.6
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 84.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 7.2e-146 520.8 326 80.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 9.4e-146 520.4 305 82.3
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 1.2e-145 520.0 301 85.4
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.1e-145 519.2 305 83.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 2.7e-145 518.8 305 81.6
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.0
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.0e-144 516.9 305 82.0
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 1.4e-144 516.5 305 81.3
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-144 516.2 305 82.0
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.3
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 82.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.0
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 83.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 5.2e-144 514.6 305 82.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 6.7e-144 514.2 305 83.3
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 81.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 1.5e-143 513.1 305 82.0
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.0e-143 512.7 308 81.5
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 79.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 82.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 7.4e-143 510.8 301 84.4
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 9.7e-143 510.4 302 81.8
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 1.7e-142 509.6 305 80.7
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.2e-142 509.2 305 80.3
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 3.7e-142 508.4 307 82.7
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 6.3e-142 507.7 305 80.3
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 1.1e-141 506.9 302 83.1
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.6e-140 503.1 330 75.8
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.6e-140 502.3 372 69.1
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.5e-140 501.9 303 81.2
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.1e-138 496.9 305 79.7
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 5.5e-138 494.6 303 76.9
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 1.6e-137 493.0 388 67.3
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 6.1e-137 491.1 305 77.7
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.8e-136 489.6 305 77.4
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 3.0e-136 488.8 307 78.2
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.0e-136 488.8 305 78.0
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.0e-136 488.4 304 79.6
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 4.4e-135 485.0 307 77.5
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 5.7e-135 484.6 307 76.2
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 9.7e-135 483.8 303 78.2
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 1.3e-134 483.4 307 76.2
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.3e-134 483.4 307 75.9
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 8.2e-134 480.7 306 76.1
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 8.2e-134 480.7 306 76.1
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 8.2e-134 480.7 306 76.1
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.4e-133 479.9 306 76.5
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.1e-133 478.4 305 76.1
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 3.8e-131 471.9 305 77.0
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 3.8e-131 471.9 304 75.7
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 3.8e-131 471.9 304 75.7
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 6.5e-131 471.1 304 75.7
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 9.4e-130 467.2 304 75.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.2e-123 446.0 300 71.7
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.5e-119 433.3 306 68.6
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.3e-118 430.3 304 67.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 1.2e-116 423.7 304 66.4
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.1e-114 417.2 305 70.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.1e-113 411.4 303 66.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.8e-112 409.8 235 86.8
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.1e-109 398.7 261 78.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.1e-106 390.6 303 62.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 3.4e-103 379.0 309 61.5
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.9e-102 375.2 225 80.9
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 4.7e-97 358.6 225 81.8
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.3e-91 339.7 228 76.3
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 2.8e-89 332.8 207 76.8
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.4e-71 272.7 160 82.5
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 7.9e-68 261.5 143 86.0
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.0e-67 261.2 181 72.9
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.4e-64 250.8 149 77.9
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 3.3e-58 229.6 154 74.0
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 5.3e-56 222.2 153 69.3
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.6e-52 210.7 300 45.3
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 6.3e-41 172.2 141 57.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.1e-40 171.4 125 67.2
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.8e-40 170.6 83 91.6
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 6.9e-40 168.7 89 85.4
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.9e-40 168.7 80 95.0
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.6e-39 166.8 79 94.9
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 8.5e-38 161.8 80 87.5
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 1.4e-37 161.0 299 35.5
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-36 157.9 205 47.8
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 5.7e-34 149.1 305 33.4
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.5e-31 139.4 90 75.6
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 3.9e-27 126.3 76 77.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 9.1e-24 115.2 58 87.9
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 3.8e-22 109.8 60 85.0
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 1.9e-21 107.5 64 78.1
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 2.7e-20 103.6 296 31.8
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-15 87.4 69 73.9
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.5e-13 80.5 238 28.6


User provided reference genes

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