Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.6e-138 496.1 256 100.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.8e-100 368.6 258 72.1
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.5e-99 364.8 268 70.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 6.1e-98 361.3 255 69.8
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.4e-97 360.1 263 70.3
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 5.2e-97 358.2 258 70.2
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 5.2e-97 358.2 212 79.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 6.8e-97 357.8 260 69.6
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.5e-96 356.7 258 69.0
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-96 356.7 209 80.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.0e-96 356.3 208 79.3
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 3.4e-96 355.5 241 71.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 3.4e-96 355.5 241 71.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.4e-96 355.1 266 67.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 4.4e-96 355.1 210 79.5
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 2.2e-95 352.8 216 75.5
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.3e-95 351.3 263 68.1
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.8e-94 349.7 211 78.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.1e-94 349.0 209 77.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.1e-94 348.6 263 67.7
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 4.1e-94 348.6 206 76.7
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 5.4e-94 348.2 209 78.0
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 7.0e-94 347.8 223 74.0
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 9.1e-94 347.4 211 77.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.2e-93 347.1 254 67.7
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-93 347.1 254 67.7
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-93 347.1 254 67.7
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.2e-93 347.1 214 77.1
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.2e-93 347.1 211 77.7
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.6e-93 346.7 260 68.1
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 2.0e-93 346.3 209 78.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.5e-93 345.5 263 65.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 3.5e-93 345.5 208 77.4
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 5.9e-93 344.7 256 67.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.3e-92 343.6 257 66.1
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.3e-92 343.6 254 67.7
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-92 343.6 254 67.7
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.3e-92 343.6 213 75.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.8e-92 342.0 254 67.3
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 3.8e-92 342.0 256 65.2
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 5.0e-92 341.7 211 76.3
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 8.6e-92 340.9 256 67.2
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.5e-91 340.1 212 75.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.5e-91 339.3 264 67.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.5e-91 339.3 211 72.0
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 3.3e-91 339.0 208 75.5
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 4.2e-91 338.6 219 71.2
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.2e-91 338.6 222 74.8
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.2e-91 338.6 218 73.9
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 5.5e-91 338.2 256 66.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 9.5e-91 337.4 246 68.3
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.6e-90 336.7 208 75.0
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 2.1e-90 336.3 214 71.5
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.1e-90 336.3 210 72.9
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.1e-90 336.3 217 74.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 2.8e-90 335.9 214 72.4
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 3.6e-90 335.5 208 74.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 3.6e-90 335.5 219 69.4
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 6.1e-90 334.7 211 74.4
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 6.1e-90 334.7 209 73.7
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 8.0e-90 334.3 218 70.6
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.8e-89 333.2 217 70.5
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.8e-89 333.2 217 70.5
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.8e-89 333.2 222 71.6
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.8e-89 333.2 226 69.0
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-89 332.8 214 71.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.3e-89 332.8 237 68.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 209 72.7
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.0e-89 332.4 209 72.7
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.0e-89 332.4 215 74.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 3.0e-89 332.4 226 69.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.0e-89 332.0 208 71.6
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-89 331.6 217 70.5
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 6.8e-89 331.3 203 73.9
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 6.8e-89 331.3 219 71.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.5e-88 330.1 214 71.0
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.5e-88 330.1 203 74.4
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 2.0e-88 329.7 247 64.0
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 3.4e-88 328.9 225 68.4
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.4e-88 328.9 202 73.3
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 4.4e-88 328.6 203 73.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 5.7e-88 328.2 252 63.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 2.8e-87 325.9 214 71.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 8.3e-87 324.3 233 66.5
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 205 74.6
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 2.4e-86 322.8 204 74.5
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 3.1e-86 322.4 207 73.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.1e-86 322.0 216 70.8
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 9.2e-86 320.9 211 72.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.7e-85 319.3 203 73.9
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.5e-85 318.5 301 56.1
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 5.9e-85 318.2 203 71.9
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.3e-84 317.0 200 72.5
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.3e-84 316.2 198 72.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 2.3e-84 316.2 214 66.4
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 8.6e-84 314.3 210 68.6
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.5e-83 313.5 221 65.2
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 5.6e-83 311.6 225 64.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.6e-82 310.1 217 67.7
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.8e-82 309.3 202 69.3
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 4.0e-81 305.4 202 69.3
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 9.2e-78 294.3 172 78.5
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.2e-77 293.9 306 51.0
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.5e-77 292.4 222 67.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.3e-76 289.7 212 67.9
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 6.8e-73 278.1 203 62.1
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.9e-67 260.0 295 49.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 7.3e-67 258.1 148 81.8
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.7e-66 255.4 170 69.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.3e-63 247.3 136 86.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.7e-63 246.9 289 49.5
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 9.2e-62 241.1 185 62.2
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 9.9e-56 221.1 198 54.5
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.2e-54 216.1 146 67.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-53 213.8 202 53.5
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.3e-52 210.7 184 53.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 4.3e-51 205.7 184 50.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 7.3e-51 204.9 119 83.2
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 3.2e-46 189.5 212 48.6
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.2e-46 189.5 190 46.3
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.1e-45 186.8 154 57.8
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 2.1e-45 186.8 106 84.9
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-42 176.8 169 52.7
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 6.2e-42 175.3 100 85.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.4e-41 173.3 101 77.2
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-40 171.0 100 83.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.2e-39 166.8 100 77.0
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 4.9e-39 165.6 106 68.9
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.6e-35 152.1 97 75.3
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.1e-34 150.2 87 83.9
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.7e-31 140.6 154 48.7
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 4.6e-29 132.5 84 67.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 3.0e-28 129.8 183 44.8
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.4e-25 120.9 101 56.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 5.3e-25 119.0 129 48.8
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.7e-23 114.0 69 76.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 8.4e-23 111.7 69 75.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 8.4e-23 111.7 69 75.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 8.4e-23 111.7 69 75.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 8.4e-23 111.7 69 75.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.4e-22 110.9 174 35.1
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 3.2e-22 109.8 68 75.0
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.2e-21 107.8 76 68.4
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 2.7e-21 106.7 102 57.8
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.3e-18 97.8 182 32.4
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 7.9e-13 78.6 165 29.7
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.8e-12 77.4 77 50.6
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.3e-12 77.0 49 73.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.0e-12 76.6 44 79.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.0e-12 76.6 44 79.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 4.8e-10 69.3 121 36.4
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 6.3e-10 68.9 55 61.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 6.3e-10 68.9 42 76.2
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.4e-09 67.8 56 60.7
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 6.9e-09 65.5 47 66.0
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 9.1e-09 65.1 42 71.4
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.0e-08 63.9 40 72.5
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 5.0e-07 59.3 105 38.1
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.5e-06 55.8 54 42.6


User provided reference genes

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