Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.9e-75 285.8 147 100.0
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 1.4e-30 136.7 88 72.7
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 5.3e-30 134.8 90 73.3
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 5.3e-30 134.8 92 71.7
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 1.6e-29 133.3 76 77.6
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 3.5e-29 132.1 92 69.6
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.7e-28 129.8 92 70.7
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.7e-28 129.8 92 70.7
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.7e-28 129.8 92 70.7
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.2e-28 129.4 92 70.7
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 2.2e-28 129.4 92 70.7
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 2.9e-28 129.0 92 69.6
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.9e-28 129.0 91 70.3
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 3.8e-28 128.6 85 77.6
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 5.0e-28 128.3 92 68.5
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 6.5e-28 127.9 91 68.1
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 8.5e-28 127.5 120 59.2
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 8.5e-28 127.5 94 67.0
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 1.1e-27 127.1 92 67.4
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.1e-27 127.1 90 67.8
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 1.1e-27 127.1 88 68.2
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.1e-27 127.1 94 67.0
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.5e-27 126.7 89 67.4
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.5e-27 126.7 89 67.4
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.5e-27 125.9 92 68.5
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 3.2e-27 125.6 140 52.1
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 3.2e-27 125.6 94 66.0
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 4.2e-27 125.2 92 69.6
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 4.2e-27 125.2 92 67.4
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 9.4e-27 124.0 133 54.1
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 9.4e-27 124.0 133 51.1
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.8e-25 119.8 91 67.0
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 2.3e-25 119.4 111 55.0
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 3.0e-25 119.0 101 59.4
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 4.0e-25 118.6 85 72.9
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 4.0e-25 118.6 85 72.9
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 8.8e-25 117.5 117 57.3
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 8.8e-25 117.5 90 63.3
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 1.5e-24 116.7 87 64.4
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.5e-24 116.7 87 64.4
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.5e-24 116.7 87 64.4
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.4e-24 115.2 87 63.2
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 5.7e-24 114.8 88 67.0
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 7.5e-24 114.4 92 63.0
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.8e-23 112.5 87 66.7
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 8.3e-23 110.9 101 60.4
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 2.4e-22 109.4 72 73.6
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 2.4e-22 109.4 87 64.4
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 3.1e-22 109.0 90 64.4
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 4.1e-22 108.6 87 63.2
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 4.1e-22 108.6 88 64.8
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 5.4e-22 108.2 137 50.4
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 7.0e-22 107.8 90 60.0
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 7.0e-22 107.8 88 63.6
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 9.1e-22 107.5 88 63.6
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 3.5e-21 105.5 102 53.9
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 7.7e-21 104.4 88 61.4
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 7.7e-21 104.4 87 60.9
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.0e-20 104.0 87 60.9
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.0e-20 104.0 87 60.9
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 1.0e-20 104.0 87 60.9
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 2.3e-20 102.8 103 53.4
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 2.3e-20 102.8 103 53.4
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 2.3e-20 102.8 87 60.9
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 2.3e-20 102.8 70 65.7
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 3.8e-20 102.1 104 51.0
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 5.0e-20 101.7 80 62.5
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 6.6e-20 101.3 83 60.2
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 1.5e-19 100.1 80 61.2
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 1.5e-19 100.1 80 61.2
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 2.5e-19 99.4 80 61.2
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 3.3e-19 99.0 92 58.7
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 4.2e-19 98.6 66 71.2
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 2.1e-18 96.3 80 58.8
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 3.6e-18 95.5 80 61.2
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 6.1e-18 94.7 80 58.8
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 8.9e-17 90.9 64 71.9
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.2e-16 90.5 85 55.3
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.2e-16 90.5 85 55.3
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 2.0e-16 89.7 61 70.5
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.6e-16 89.4 77 62.3
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 7.5e-16 87.8 76 61.8
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 3.7e-15 85.5 63 61.9
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 1.1e-14 84.0 62 66.1
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-14 83.6 51 70.6
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.4e-14 83.6 88 52.3
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 1.8e-14 83.2 97 50.5
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 3.1e-14 82.4 61 60.7
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 5.4e-14 81.6 97 43.3
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 7.0e-14 81.3 50 70.0
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 7.0e-14 81.3 50 70.0
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 9.2e-14 80.9 50 72.0
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-13 80.5 50 68.0
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 1.6e-13 80.1 63 60.3
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 1.6e-13 80.1 50 68.0
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 3.5e-13 79.0 50 68.0
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-13 78.6 50 68.0
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-13 78.6 50 68.0
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 4.5e-13 78.6 50 68.0
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 7.8e-13 77.8 80 48.8
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 7.8e-13 77.8 50 66.0
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 1.0e-12 77.4 50 66.0
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 1.3e-12 77.0 50 66.0
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.7e-12 76.6 76 53.9
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.9e-12 75.9 62 58.1
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 8.6e-12 74.3 50 66.0
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.9e-11 73.2 72 52.8
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 2.5e-11 72.8 50 62.0
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 3.3e-11 72.4 50 66.0
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 3.3e-11 72.4 50 66.0
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-11 71.6 55 61.8
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 5.6e-11 71.6 55 58.2
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.8e-10 69.3 60 55.0
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 8.0e-10 67.8 47 70.2
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 8.0e-10 67.8 43 69.8
SHI48062 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-09 65.9 43 65.1
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 8.9e-09 64.3 88 42.0
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 2.6e-08 62.8 43 65.1
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 2.2e-07 59.7 43 67.4
SHI34608 Sapria himalayana HOM05D000540 ORTHO05D000681 2.9e-07 59.3 47 55.3
CAN.G993.9 Capsicum annuum HOM05D003467 ORTHO05D008105 4.9e-07 58.5 67 44.8
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 6.4e-07 58.2 92 38.0
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 6.4e-07 58.2 92 38.0
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 6.4e-07 58.2 92 38.0
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 6.4e-07 58.2 92 38.0
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 6.4e-07 58.2 92 37.0
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 8.3e-07 57.8 94 38.3
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 8.3e-07 57.8 92 37.0
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 1.1e-06 57.4 94 38.3
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 1.1e-06 57.4 92 35.9
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 1.1e-06 57.4 35 68.6
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 1.4e-06 57.0 92 37.0
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.4e-06 57.0 86 39.5
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 1.9e-06 56.6 77 44.2
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 2.4e-06 56.2 92 37.0
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 3.2e-06 55.8 65 49.2
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 3.2e-06 55.8 65 49.2
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 3.2e-06 55.8 35 65.7
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 4.1e-06 55.5 92 37.0
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 5.4e-06 55.1 87 40.2
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 7.0e-06 54.7 35 65.7
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 9.2e-06 54.3 77 41.6
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 9.2e-06 54.3 77 41.6


User provided reference genes

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