Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00416 Eucalyptus grandis HOM05D002099 ORTHO05D002080 2.8e-241 838.2 420 100.0
Eucgr.D00420 Eucalyptus grandis HOM05D002099 ORTHO05D002080 5.6e-157 558.1 350 85.4
PGR031G0337 Punica granatum HOM05D002099 ORTHO05D002080 2.1e-55 220.7 346 39.6
Atru.chr10.1518 Acer truncatum HOM05D002099 ORTHO05D002080 1.6e-47 194.5 328 38.4
Prupe.4G068800 Prunus persica HOM05D002099 ORTHO05D002080 4.1e-43 179.9 204 45.1
Dinv32323 Davidia involucrata HOM05D002099 ORTHO05D002080 1.5e-40 171.4 199 46.2
Thecc.06G163200 Theobroma cacao HOM05D002099 ORTHO05D002080 1.5e-40 171.4 336 35.7
Sabra11G0060000 Salix brachista HOM05D002099 ORTHO05D002080 3.3e-40 170.2 340 36.8
RcHm_v2.0_Chr5g0012061 Rosa chinensis HOM05D002099 ORTHO05D002080 5.6e-40 169.5 214 43.5
MD00G1007100 Malus domestica HOM05D002099 ORTHO05D002080 9.5e-40 168.7 284 38.0
Sabra11G0056600 Salix brachista HOM05D002099 ORTHO05D002080 9.5e-40 168.7 340 36.8
Oeu033707.1 Olea europaea HOM05D002099 ORTHO05D002080 1.2e-39 168.3 333 36.9
CSS0006478 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 2.8e-39 167.2 186 47.3
Lj1A1177T98 Lonicera japonica HOM05D002099 ORTHO05D002080 1.1e-38 165.2 348 34.2
Gorai.011G035700 Gossypium raimondii HOM05D002099 ORTHO05D002080 3.1e-38 163.7 334 34.4
FAN05G1516 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.8e-37 159.5 212 41.5
Actinidia07658 Actinidia chinensis HOM05D002099 ORTHO05D002080 1.3e-36 158.3 193 43.5
TWI53G0885 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 1.3e-36 158.3 354 34.5
Hma1.2p1_1150F.1_g261800 Hydrangea macrophylla HOM05D002099 ORTHO05D002080 2.2e-36 157.5 361 36.0
Rhsim02G0137700 Rhododendron simsii HOM05D002099 ORTHO05D002080 2.2e-36 157.5 415 32.5
Actinidia39530 Actinidia chinensis HOM05D002099 ORTHO05D002080 2.9e-36 157.1 195 43.6
FAN16G0395 Fragaria x ananassa HOM05D002099 ORTHO05D002080 8.4e-36 155.6 200 43.5
FAN02G1903 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.4e-35 154.8 197 41.1
Cfa001095 Carpinus fangiana HOM05D002099 ORTHO05D002080 1.9e-35 154.5 346 32.9
FAN14G1923 Fragaria x ananassa HOM05D002099 ORTHO05D002080 1.9e-35 154.5 197 40.6
THA.LOC104820633 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 1.9e-35 154.5 358 31.8
FvH4_6g08010 Fragaria vesca HOM05D002099 ORTHO05D002080 3.2e-35 153.7 197 40.6
Nn3g21047 Nelumbo nucifera HOM05D002099 ORTHO05D002080 3.2e-35 153.7 345 35.4
FAN21G2634 Fragaria x ananassa HOM05D002099 ORTHO05D002080 4.2e-35 153.3 209 39.2
Haze_05404 Corylus avellana HOM05D002099 ORTHO05D002080 3.5e-34 150.2 346 34.1
TAR626G1033 Trochodendron aralioides HOM05D002099 ORTHO05D002080 6.0e-34 149.4 203 41.4
EL10Ac3g05623 Beta vulgaris HOM05D002099 ORTHO05D002080 7.8e-34 149.1 195 42.6
Ciclev10014980m.g Citrus clementina HOM05D002099 ORTHO05D002080 7.8e-34 149.1 328 33.2
vmacro10941 Vaccinium macrocarpon HOM05D002099 ORTHO05D002080 7.8e-34 149.1 330 35.8
FvH4_3g07070 Fragaria vesca HOM05D002099 ORTHO05D002080 1.0e-33 148.7 198 41.9
Potri.011G072200 Populus trichocarpa HOM05D002099 ORTHO05D002080 1.0e-33 148.7 342 32.2
arahy.Tifrunner.gnm1.ann1.8WY03U Arachis hypogaea HOM05D002099 ORTHO05D002080 1.3e-33 148.3 327 33.9
CANSAT64G1043 Cannabis sativa HOM05D002099 ORTHO05D002080 1.3e-33 148.3 340 32.4
FAN11G3654 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.1e-33 146.4 198 41.4
Hund21456 Selenicereus undatus HOM05D002099 ORTHO05D002080 8.7e-33 145.6 322 34.8
Manes.16G044100 Manihot esculenta HOM05D002099 ORTHO05D002080 3.3e-32 143.7 189 39.7
TPR.G4518 Trifolium pratense HOM05D002099 ORTHO05D002080 7.3e-32 142.5 197 39.1
Lj2A316T70 Lonicera japonica HOM05D002099 ORTHO05D002080 9.6e-32 142.1 363 30.9
Lalb_Chr15g0086491 Lupinus albus HOM05D002099 ORTHO05D002080 9.6e-32 142.1 183 43.7
ClCG01G024030 Citrullus lanatus HOM05D002099 ORTHO05D002080 3.6e-31 140.2 342 33.3
Glyma.15G087400 Glycine max HOM05D002099 ORTHO05D002080 3.6e-31 140.2 246 36.6
Sed0024210 Sechium edule HOM05D002099 ORTHO05D002080 3.6e-31 140.2 173 44.5
PGSC0003DMG400028410 Solanum tuberosum HOM05D002099 ORTHO05D002080 3.6e-31 140.2 360 29.4
CsaV3_6G051160 Cucumis sativus L. HOM05D002099 ORTHO05D002080 4.7e-31 139.8 231 38.5
QL05p050338 Quercus lobata HOM05D002099 ORTHO05D002080 4.7e-31 139.8 336 34.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 6.2e-31 139.4 356 31.2
arahy.Tifrunner.gnm1.ann1.68LYJE Arachis hypogaea HOM05D002099 ORTHO05D002080 8.1e-31 139.0 327 32.7
CiPaw.09G136000 Carya illinoinensis HOM05D002099 ORTHO05D002080 1.1e-30 138.7 176 44.3
Peaxi162Scf00112g01717 Petunia axillaris HOM05D002099 ORTHO05D002080 1.4e-30 138.3 195 41.0
Sp1g25650 Schrenkiella parvula HOM05D002099 ORTHO05D002080 2.4e-30 137.5 348 31.9
Lalb_Chr12g0204881 Lupinus albus HOM05D002099 ORTHO05D002080 6.9e-30 136.0 159 41.5
Nitab4.5_0001778g0180 Nicotiana tabacum HOM05D002099 ORTHO05D002080 6.9e-30 136.0 232 37.1
AL1G43590 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 9.0e-30 135.6 276 34.8
SGA_v2.0_scaffold106G30609 Striga asiatica HOM05D002099 ORTHO05D002080 1.5e-29 134.8 325 31.7
VMungo0540G0417 Vigna mungo HOM05D002099 ORTHO05D002080 1.5e-29 134.8 198 38.9
TAR627G0673 Trochodendron aralioides HOM05D002099 ORTHO05D002080 2.0e-29 134.4 179 41.3
Carub.0001s2800 Capsella rubella HOM05D002099 ORTHO05D002080 4.4e-29 133.3 194 38.1
Aa31LG6G5860 Aethionema arabicum HOM05D002099 ORTHO05D002080 5.8e-29 132.9 195 39.0
Gohir.A10G033300 Gossypium hirsutum HOM05D002099 ORTHO05D002080 7.6e-29 132.5 338 32.0
AT1G29760 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 9.9e-29 132.1 191 38.2
CARHR029130 Cardamine hirsuta HOM05D002099 ORTHO05D002080 9.9e-29 132.1 193 36.3
Lsat_1_v5_gn_1_112181 Lactuca sativa HOM05D002099 ORTHO05D002080 9.9e-29 132.1 192 38.0
Psat1g193200 Pisum sativum HOM05D002099 ORTHO05D002080 1.3e-28 131.7 209 37.3
CAN.G411.28 Capsicum annuum HOM05D002099 ORTHO05D002080 2.9e-28 130.6 339 29.5
Migut.H01402 Erythranthe guttata HOM05D002099 ORTHO05D002080 2.9e-28 130.6 318 33.6
MBI06_g16566_MAGBIO Magnolia biondii HOM05D002099 ORTHO05D002080 2.9e-28 130.6 163 42.9
Medtr2g017670 Medicago truncatula HOM05D002099 ORTHO05D002080 3.8e-28 130.2 341 32.8
Solyc02g071900.3 Solanum lycopersicum HOM05D002099 ORTHO05D002080 4.9e-28 129.8 368 27.2
Duzib235G1340 Durio zibethinus HOM05D002099 ORTHO05D002080 8.4e-28 129.0 122 48.4
MELO3C007187.2 Cucumis melo HOM05D002099 ORTHO05D002080 1.1e-27 128.6 338 33.7
Sc17g0005550 Simmondsia chinensis HOM05D002099 ORTHO05D002080 1.1e-27 128.6 189 38.6
Psat7g067320 Pisum sativum HOM05D002099 ORTHO05D002080 3.2e-27 127.1 234 36.8
Lsat_1_v5_gn_4_49340 Lactuca sativa HOM05D002099 ORTHO05D002080 5.4e-27 126.3 241 34.0
Medtr8g087730 Medicago truncatula HOM05D002099 ORTHO05D002080 5.4e-27 126.3 245 34.7
Aqoxy1G01946 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 1.2e-26 125.2 165 38.8
Glyma.05G162700 Glycine max HOM05D002099 ORTHO05D002080 2.1e-26 124.4 187 36.4
Thhalv10007317m.g Eutrema salsugineum HOM05D002099 ORTHO05D002080 3.5e-26 123.6 327 29.7
Sopen02g020890 Solanum pennellii HOM05D002099 ORTHO05D002080 3.5e-26 123.6 352 28.4
Sed0019424 Sechium edule HOM05D002099 ORTHO05D002080 6.0e-26 122.9 263 33.8
Aqoxy4G00213 Aquilegia oxysepala HOM05D002099 ORTHO05D002080 1.7e-25 121.3 160 38.1
Duzib160G0890 Durio zibethinus HOM05D002099 ORTHO05D002080 1.7e-25 121.3 346 30.6
Peaxi162Scf00854g00214 Petunia axillaris HOM05D002099 ORTHO05D002080 1.7e-25 121.3 169 39.1
Ca_17883_v3 Cicer arietinum L. HOM05D002099 ORTHO05D002080 3.0e-25 120.6 218 33.5
Lalb_Chr13g0295371 Lupinus albus HOM05D002099 ORTHO05D002080 3.9e-25 120.2 155 40.0
Gohir.D10G034000 Gossypium hirsutum HOM05D002099 ORTHO05D002080 8.7e-25 119.0 126 43.7
TAR629G0376 Trochodendron aralioides HOM05D002099 ORTHO05D002080 8.7e-25 119.0 187 38.5
A04p26330 Brassica napus HOM05D002099 ORTHO05D002080 1.1e-24 118.6 208 38.0
Lj4g0025167 Lotus japonicus HOM05D002099 ORTHO05D002080 1.1e-24 118.6 244 35.7
Phvul.006G170800 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 1.1e-24 118.6 347 29.4
BraA04t18136Z Brassica rapa HOM05D002099 ORTHO05D002080 1.5e-24 118.2 208 38.0
VMungo0251G2043 Vigna mungo HOM05D002099 ORTHO05D002080 7.3e-24 115.9 342 29.8
AT2G34380 Arabidopsis thaliana HOM05D002099 ORTHO05D002080 1.6e-23 114.8 252 36.5
BcaB06g28762 Brassica carinata HOM05D002099 ORTHO05D002080 1.6e-23 114.8 169 37.9
BolC4t27840H Brassica oleracea HOM05D002099 ORTHO05D002080 2.1e-23 114.4 169 37.3
AL4G30350 Arabidopsis lyrata HOM05D002099 ORTHO05D002080 2.8e-23 114.0 148 42.6
Phvul.002G242400 Phaseolus vulgaris HOM05D002099 ORTHO05D002080 2.8e-23 114.0 243 31.7
unitig_748.g7815 Utricularia gibba HOM05D002099 ORTHO05D002080 2.8e-23 114.0 148 35.8
BolC3t19872H Brassica oleracea HOM05D002099 ORTHO05D002080 6.2e-23 112.8 337 31.2
BcaC01g00134 Brassica carinata HOM05D002099 ORTHO05D002080 1.4e-22 111.7 336 29.8
C04p63730 Brassica napus HOM05D002099 ORTHO05D002080 1.4e-22 111.7 211 37.0
Carub.0004s1605 Capsella rubella HOM05D002099 ORTHO05D002080 1.4e-22 111.7 265 32.5
C03p76160 Brassica napus HOM05D002099 ORTHO05D002080 5.3e-22 109.8 337 30.6
Sp4g16650 Schrenkiella parvula HOM05D002099 ORTHO05D002080 5.3e-22 109.8 187 35.3
BcaB06g28760 Brassica carinata HOM05D002099 ORTHO05D002080 6.9e-22 109.4 169 37.9
BcaB03g12176 Brassica carinata HOM05D002099 ORTHO05D002080 3.4e-21 107.1 408 29.4
Oeu039867.2 Olea europaea HOM05D002099 ORTHO05D002080 3.4e-21 107.1 101 50.5
TPR.G6783 Trifolium pratense HOM05D002099 ORTHO05D002080 4.5e-21 106.7 148 37.8
GSVIVG01021275001 Vitis vinifera HOM05D002099 ORTHO05D002080 4.5e-21 106.7 102 49.0
arahy.Tifrunner.gnm1.ann1.NR0K7A Arachis hypogaea HOM05D002099 ORTHO05D002080 9.9e-21 105.5 188 36.7
Cc02_g15900 Coffea canephora HOM05D002099 ORTHO05D002080 9.9e-21 105.5 113 45.1
A08p24870 Brassica napus HOM05D002099 ORTHO05D002080 2.9e-20 104.0 185 35.1
BraA08t34442Z Brassica rapa HOM05D002099 ORTHO05D002080 2.9e-20 104.0 185 35.1
arahy.Tifrunner.gnm1.ann1.UFQ84G Arachis hypogaea HOM05D002099 ORTHO05D002080 4.9e-20 103.2 204 35.8
HanXRQChr04g0116231 Helianthus annuus HOM05D002099 ORTHO05D002080 6.4e-20 102.8 192 31.8
DCAR_003969 Daucus carota HOM05D002099 ORTHO05D002080 1.4e-19 101.7 347 28.0
Manes.05G011866 Manihot esculenta HOM05D002099 ORTHO05D002080 1.4e-19 101.7 121 36.4
PSO782G0530 Papaver somniferum HOM05D002099 ORTHO05D002080 3.2e-19 100.5 152 38.2
Gohir.A06G198600 Gossypium hirsutum HOM05D002099 ORTHO05D002080 4.2e-19 100.1 176 33.5
Sabra04G0041900 Salix brachista HOM05D002099 ORTHO05D002080 7.1e-19 99.4 145 38.6
PSO170G6085 Papaver somniferum HOM05D002099 ORTHO05D002080 9.3e-19 99.0 152 37.5
Dinv18388 Davidia involucrata HOM05D002099 ORTHO05D002080 1.6e-18 98.2 176 37.5
Nitab4.5_0000347g0160 Nicotiana tabacum HOM05D002099 ORTHO05D002080 2.7e-18 97.4 161 36.6
BcaB07g32563 Brassica carinata HOM05D002099 ORTHO05D002080 6.0e-18 96.3 160 35.6
CARHR128460 Cardamine hirsuta HOM05D002099 ORTHO05D002080 6.0e-18 96.3 173 34.7
ATR0213G022 Amborella trichopoda HOM05D002099 ORTHO05D002080 7.9e-18 95.9 253 28.9
HPP92_025851 Vanilla planifolia HOM05D002099 ORTHO05D002080 1.3e-17 95.1 166 34.3
ECA236G4752 Erigeron canadensis HOM05D002099 ORTHO05D002080 1.8e-17 94.7 184 31.5
SalBow7G2784 Salvia bowleyana HOM05D002099 ORTHO05D002080 1.8e-17 94.7 88 47.7
SalBow7G4550 Salvia bowleyana HOM05D002099 ORTHO05D002080 1.8e-17 94.7 88 47.7
CDE02G2274 Ceratophyllum demersum HOM05D002099 ORTHO05D002080 3.9e-17 93.6 153 32.7
Aa31LG9G14100 Aethionema arabicum HOM05D002099 ORTHO05D002080 6.7e-17 92.8 197 34.5
Nitab4.5_0004191g0010 Nicotiana tabacum HOM05D002099 ORTHO05D002080 6.7e-17 92.8 157 36.3
Gorai.010G240300 Gossypium raimondii HOM05D002099 ORTHO05D002080 1.1e-16 92.0 167 32.3
HanXRQChr11g0343811 Helianthus annuus HOM05D002099 ORTHO05D002080 1.1e-16 92.0 175 30.9
Oeu010026.1 Olea europaea HOM05D002099 ORTHO05D002080 1.1e-16 92.0 208 30.8
GSVIVG01014151001 Vitis vinifera HOM05D002099 ORTHO05D002080 4.3e-16 90.1 139 36.7
PGSC0003DMG400007064 Solanum tuberosum HOM05D002099 ORTHO05D002080 7.4e-16 89.4 144 37.5
Cpa.g.sc77.45 Carica papaya HOM05D002099 ORTHO05D002080 2.8e-15 87.4 169 32.5
Peaxi162Scf00111g01452 Petunia axillaris HOM05D002099 ORTHO05D002080 2.8e-15 87.4 143 36.4
Solyc07g062230.4 Solanum lycopersicum HOM05D002099 ORTHO05D002080 2.8e-15 87.4 144 36.1
TWI39G0758 Tripterygium wilfordii HOM05D002099 ORTHO05D002080 6.2e-15 86.3 167 35.3
DCAR_019606 Daucus carota HOM05D002099 ORTHO05D002080 1.4e-14 85.1 177 35.0
Rhsim06G0211000 Rhododendron simsii HOM05D002099 ORTHO05D002080 5.3e-14 83.2 153 33.3
Manes.03G091800 Manihot esculenta HOM05D002099 ORTHO05D002080 2.0e-13 81.3 159 35.2
SGA_v2.0_scaffold130G34273 Striga asiatica HOM05D002099 ORTHO05D002080 2.0e-13 81.3 152 36.8
Migut.M00702 Erythranthe guttata HOM05D002099 ORTHO05D002080 3.4e-13 80.5 136 36.0
Os09g0534000 Oryza sativa ssp. japonica HOM05D002099 ORTHO05D002080 4.5e-13 80.1 146 33.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.6e-13 79.3 127 39.4
Actinidia12596 Actinidia chinensis HOM05D002099 ORTHO05D002080 3.8e-12 77.0 85 47.1
A09p36690 Brassica napus HOM05D002099 ORTHO05D002080 8.4e-12 75.9 155 31.6
Cpa.g.c47488 Carica papaya HOM05D002099 ORTHO05D002080 1.4e-11 75.1 67 52.2
ECA234G2299 Erigeron canadensis HOM05D002099 ORTHO05D002080 1.4e-11 75.1 73 46.6
HanXRQChr16g0498641 Helianthus annuus HOM05D002099 ORTHO05D002080 2.7e-10 70.9 94 38.3
Lsat_1_v5_gn_7_25220 Lactuca sativa HOM05D002099 ORTHO05D002080 3.5e-10 70.5 184 23.9
MD11G1267400 Malus domestica HOM05D002099 ORTHO05D002080 4.6e-10 70.1 143 33.6
Cc05_g10880 Coffea canephora HOM05D002099 ORTHO05D002080 6.0e-10 69.7 143 30.8
Lj1A826G60 Lonicera japonica HOM05D002099 ORTHO05D002080 2.3e-09 67.8 63 49.2
BcaC05g26991 Brassica carinata HOM05D002099 ORTHO05D002080 3.0e-09 67.4 156 30.8
C05p28510 Brassica napus HOM05D002099 ORTHO05D002080 3.0e-09 67.4 156 30.8
BolC5t31575H Brassica oleracea HOM05D002099 ORTHO05D002080 3.0e-09 67.4 156 30.8
BraA09t39188Z Brassica rapa HOM05D002099 ORTHO05D002080 3.0e-09 67.4 154 30.5
CSS0029955 Camellia sinensis var. sinensis HOM05D002099 ORTHO05D002080 6.7e-09 66.2 145 33.8
FAN21G0997 Fragaria x ananassa HOM05D002099 ORTHO05D002080 5.6e-08 63.2 50 52.0
THA.LOC104812310 Tarenaya hassleriana HOM05D002099 ORTHO05D002080 7.4e-08 62.8 217 25.8
ECA248G3894 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.0e-06 57.0 74 41.9
Pp3c8_820 Physcomitrium patens HOM05D002099 ORTHO05D002080 4.0e-06 57.0 234 25.6


User provided reference genes

Program Settings