Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 1.2e-274 950.3 969 100.0
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 4.8e-87 327.0 799 64.6
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 1.8e-86 325.1 800 60.1
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 6.5e-84 316.6 812 62.4
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 4.0e-81 307.4 809 65.0
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 3.0e-73 281.2 808 60.4
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 8.3e-71 273.1 808 63.0
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 3.6e-66 257.7 805 61.6
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 4.0e-65 254.2 804 59.2
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 6.8e-65 253.4 489 42.5
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 8.9e-65 253.1 488 41.0
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 2.0e-64 251.9 808 60.6
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 4.4e-64 250.8 488 46.1
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 9.2e-62 243.0 811 60.8
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 7.8e-61 240.0 809 61.6
CiPaw.03G094900 Carya illinoinensis HOM05D003975 ORTHO05D009762 1.0e-60 239.6 800 62.2
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 1.7e-60 238.8 809 61.6
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 4.3e-59 234.2 811 61.5
ECA233G1567 Erigeron canadensis HOM05D003975 ORTHO05D009762 8.1e-58 229.9 773 49.4
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 1.4e-57 229.2 489 41.1
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 5.2e-57 227.3 489 38.4
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 6.8e-57 226.9 803 57.5
QL09p019427 Quercus lobata HOM05D003975 ORTHO05D009762 5.8e-56 223.8 811 53.9
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 7.5e-56 223.4 493 45.2
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 7.5e-56 223.4 497 54.7
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 7.5e-56 223.4 489 46.4
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 1.3e-55 222.6 489 40.1
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 2.9e-55 221.5 805 45.8
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 3.7e-55 221.1 489 41.5
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 6.4e-55 220.3 489 42.9
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 1.4e-54 219.2 796 45.0
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 1.9e-54 218.8 500 47.0
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.9e-54 218.8 804 57.5
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 1.6e-53 215.7 801 47.8
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 2.1e-53 215.3 496 45.6
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 2.7e-53 214.9 798 51.5
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 2.7e-53 214.9 812 58.6
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 6.0e-53 213.8 810 53.3
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 1.0e-52 213.0 493 56.4
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 1.9e-51 208.8 804 56.3
A01p18130 Brassica napus HOM05D003975 ORTHO05D009762 1.2e-50 206.1 799 48.3
BraA01t01768Z Brassica rapa HOM05D003975 ORTHO05D009762 1.2e-50 206.1 799 48.3
GSVIVG01018516001 Vitis vinifera HOM05D003975 ORTHO05D009762 4.7e-50 204.1 634 67.7
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 1.4e-49 202.6 818 57.5
HanXRQChr05g0142511 Helianthus annuus HOM05D003975 ORTHO05D009762 1.9e-46 192.2 494 50.2
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.6e-45 189.1 215 45.1
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 8.6e-44 183.3 239 42.7
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 1.9e-43 182.2 239 42.7
THA.LOC104821407 Tarenaya hassleriana HOM05D003975 ORTHO05D009762 1.9e-43 182.2 492 48.6
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-42 179.5 239 42.3
PGR142G2422 Punica granatum HOM05D003975 ORTHO05D009762 1.6e-42 179.1 805 60.1
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 2.1e-42 178.7 239 42.3
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 1.8e-41 175.6 802 56.1
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 2.2e-39 168.7 803 57.2
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 6.4e-39 167.2 360 52.5
C01p23090 Brassica napus HOM05D003975 ORTHO05D009762 6.4e-39 167.2 799 49.4
Migut.F00464 Erythranthe guttata HOM05D003975 ORTHO05D009762 1.1e-38 166.4 479 53.4
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 7.8e-37 160.2 801 57.6
BcaNung03570 Brassica carinata HOM05D003975 ORTHO05D009762 2.3e-36 158.7 249 36.1
Gohir.A03G058201 Gossypium hirsutum HOM05D003975 ORTHO05D009762 5.1e-36 157.5 643 65.5
CSS0048267 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 4.0e-33 147.9 438 66.4
QL05p001270 Quercus lobata HOM05D003975 ORTHO05D009762 1.5e-32 146.0 238 39.5
Nitab4.5_0009543g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.0e-32 145.6 801 57.3
Aa31LG11G1250 Aethionema arabicum HOM05D003975 ORTHO05D009762 2.1e-29 135.6 239 33.5
Nitab4.5_0002149g0030 Nicotiana tabacum HOM05D003975 ORTHO05D009762 2.1e-29 135.6 236 35.2
Sopen03g023950 Solanum pennellii HOM05D003975 ORTHO05D009762 8.7e-28 130.2 799 55.1
TAR375G0346 Trochodendron aralioides HOM05D003975 ORTHO05D009762 1.9e-27 129.0 143 43.4
Solyc03g093150.3 Solanum lycopersicum HOM05D003975 ORTHO05D009762 4.3e-27 127.9 799 55.3
CsaV3_3G016180 Cucumis sativus L. HOM05D003975 ORTHO05D009762 1.4e-25 122.9 389 57.1
PGSC0003DMG402014825 Solanum tuberosum HOM05D003975 ORTHO05D009762 3.4e-24 118.2 439 61.0
HPP92_003270 Vanilla planifolia HOM05D003975 ORTHO05D009762 3.4e-24 118.2 229 32.8
Peaxi162Scf00241g00015 Petunia axillaris HOM05D003975 ORTHO05D009762 1.8e-20 105.9 108 45.4
MBI04_g11438_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009762 3.0e-20 105.1 132 43.9
Aqoxy6G00092 Aquilegia oxysepala HOM05D003975 ORTHO05D009762 5.3e-17 94.4 165 33.9
CSS0004960 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.2e-16 93.2 123 42.3
ATR0743G137 Amborella trichopoda HOM05D003975 ORTHO05D009762 7.6e-16 90.5 158 37.3
ATR0743G010 Amborella trichopoda HOM05D003975 ORTHO05D009762 1.9e-14 85.9 158 35.4
Os10g0116000 Oryza sativa ssp. japonica HOM05D003975 ORTHO05D009762 5.5e-14 84.3 175 29.1
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 1.1e-11 76.6 109 36.7
BcaNung03569 Brassica carinata HOM05D003975 ORTHO05D009762 1.1e-11 76.6 120 39.2
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 1.1e-11 76.6 109 36.7
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 1.1e-11 76.6 109 36.7
Oeu023215.2 Olea europaea HOM05D003975 ORTHO05D009762 4.8e-10 71.2 125 37.6
Zm00001eb191870 Zea mays HOM05D011046 ORTHO05D013342 1.1e-09 70.1 192 25.0
Zm00001eb121340 Zea mays HOM05D011046 ORTHO05D013342 1.8e-09 69.3 192 24.5
Zm00001eb398710 Zea mays HOM05D011046 ORTHO05D013342 1.8e-09 69.3 192 24.5
Nitab4.5_0002556g0070 Nicotiana tabacum HOM05D003975 ORTHO05D009762 3.1e-09 68.6 119 37.0
Zm00001eb272070 Zea mays HOM05D011046 ORTHO05D013342 3.1e-09 68.6 192 24.0
Zm00001eb324030 Zea mays HOM05D011046 ORTHO05D013342 3.1e-09 68.6 192 24.0
Zm00001eb336430 Zea mays HOM05D011046 ORTHO05D013342 3.1e-09 68.6 192 24.0
Zm00001eb427360 Zea mays HOM05D011046 ORTHO05D013342 3.1e-09 68.6 192 24.0
Zm00001eb442860 Zea mays HOM05D011046 ORTHO05D013342 3.1e-09 68.6 192 24.0
MSTRG.7361 Avicennia marina HOM05D002986 ORTHO05D007611 4.1e-09 68.2 204 26.5
Nn1g01091 Nelumbo nucifera HOM05D003975 ORTHO05D009762 4.1e-09 68.2 149 31.5
PGR031G1457 Punica granatum HOM05D005973 ORTHO05D007285 9.0e-09 67.0 165 28.5
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 1.5e-08 66.2 158 27.2
FvH4_1g18320 Fragaria vesca HOM05D000424 ORTHO05D000355 2.0e-08 65.9 198 26.3
Zm00001eb059330 Zea mays HOM05D011046 ORTHO05D013342 2.0e-08 65.9 194 23.2
Thhalv10009810m.g Eutrema salsugineum HOM05D004824 ORTHO05D017526 4.5e-08 64.7 177 27.7
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 5.8e-08 64.3 143 30.1
THA.LOC104798403 Tarenaya hassleriana HOM05D002986 ORTHO05D007611 5.8e-08 64.3 183 27.3
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 7.6e-08 63.9 198 25.8
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 1.7e-07 62.8 193 24.9
Migut.M01106 Erythranthe guttata HOM05D002986 ORTHO05D007611 2.2e-07 62.4 181 25.4
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 2.2e-07 62.4 170 27.1
Oeu056521.1 Olea europaea HOM05D002986 ORTHO05D007611 2.2e-07 62.4 222 25.2
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 2.9e-07 62.0 58 46.6
FAN19G2437 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.9e-07 62.0 198 25.8
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.0e-07 61.2 192 24.5
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 6.5e-07 60.8 156 30.1
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 8.4e-07 60.5 144 26.4
FvH4_3g08550 Fragaria vesca HOM05D002986 ORTHO05D007611 8.4e-07 60.5 182 26.9
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 8.4e-07 60.5 114 30.7
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.1e-06 60.1 179 27.4
FAN28G0499 Fragaria x ananassa HOM05D006441 ORTHO05D000355 1.1e-06 60.1 198 26.3
TPR.G8466 Trifolium pratense HOM05D000424 ORTHO05D000355 1.1e-06 60.1 192 25.5
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 1.4e-06 59.7 119 30.3
Thhalv10009488m.g Eutrema salsugineum HOM05D004824 ORTHO05D031114 1.4e-06 59.7 97 35.1
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 1.4e-06 59.7 193 25.4
RcHm_v2.0_Chr5g0009291 Rosa chinensis HOM05D002986 ORTHO05D007611 1.4e-06 59.7 182 25.8
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 1.9e-06 59.3 92 37.0
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.9e-06 59.3 183 25.1
FAN26G1072 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.5e-06 58.9 114 27.2
Thecc.06G180800 Theobroma cacao HOM05D002986 ORTHO05D007611 2.5e-06 58.9 176 25.6
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 4.2e-06 58.2 65 36.9
CAN.G508.18 Capsicum annuum HOM05D000002 ORTHO05D000001 4.2e-06 58.2 97 36.1
Duzib147G1340 Durio zibethinus HOM05D000424 ORTHO05D000355 4.2e-06 58.2 97 30.9
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 4.2e-06 58.2 134 27.6
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 4.2e-06 58.2 139 28.1
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 5.5e-06 57.8 135 33.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 5.5e-06 57.8 145 27.6
Ca_27130_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 5.5e-06 57.8 212 24.5
Thecc.01G077400 Theobroma cacao HOM05D000424 ORTHO05D000355 5.5e-06 57.8 97 32.0
Lj6C200G4 Lonicera japonica HOM05D006556 ORTHO05D008146 7.2e-06 57.4 202 24.3
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 7.2e-06 57.4 106 30.2
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 9.3e-06 57.0 177 24.9


User provided reference genes

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