Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 2.3e-70 268.9 140 100.0
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.1e-36 154.1 119 63.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 2.6e-34 149.1 121 62.0
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 7.6e-34 147.5 116 62.9
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.3e-33 146.7 136 58.1
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.7e-33 146.4 122 60.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 4.9e-33 144.8 125 60.0
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.9e-33 144.8 123 60.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.4e-32 142.5 115 61.7
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 4.2e-32 141.7 121 60.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 4.2e-32 141.7 125 59.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.2e-32 141.7 122 59.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 5.4e-32 141.4 125 58.4
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 9.3e-32 140.6 122 59.8
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 9.3e-32 140.6 122 59.8
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 9.3e-32 140.6 121 58.7
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.2e-31 140.2 108 62.0
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.7e-31 139.0 122 63.1
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 6.0e-31 137.9 92 71.7
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 7.9e-31 137.5 122 59.8
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.8e-30 136.3 109 61.5
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.8e-30 136.3 109 61.5
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.8e-30 136.3 126 60.3
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.3e-30 136.0 121 58.7
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 3.0e-30 135.6 107 62.6
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 6.7e-30 134.4 121 58.7
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 8.7e-30 134.0 120 57.5
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 8.7e-30 134.0 126 60.3
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 1.1e-29 133.7 119 58.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.5e-29 133.3 104 60.6
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.5e-29 133.3 128 59.4
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.9e-29 132.9 116 58.6
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 2.5e-29 132.5 123 52.8
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.3e-29 131.7 115 54.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.3e-29 131.7 115 54.8
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.4e-29 131.0 109 59.6
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 9.6e-29 130.6 104 60.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 9.6e-29 130.6 115 54.8
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 9.6e-29 130.6 117 53.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 9.6e-29 130.6 104 59.6
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 9.6e-29 130.6 111 57.7
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.3e-28 130.2 119 56.3
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 1.6e-28 129.8 115 60.0
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 1.6e-28 129.8 120 53.3
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.6e-28 129.8 112 60.7
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.1e-28 129.4 107 58.9
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 2.8e-28 129.0 106 56.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 3.6e-28 128.6 117 53.0
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 4.8e-28 128.3 106 56.6
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 4.8e-28 128.3 99 67.7
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.2e-28 127.9 123 52.0
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 8.1e-28 127.5 103 56.3
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 8.1e-28 127.5 103 56.3
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.1e-27 127.1 114 57.0
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.8e-27 126.3 104 58.7
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.8e-27 126.3 114 56.1
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.8e-27 126.3 109 58.7
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 2.4e-27 125.9 113 58.4
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 3.1e-27 125.6 103 57.3
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.1e-27 125.6 120 55.0
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 3.1e-27 125.6 120 55.0
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 4.0e-27 125.2 104 56.7
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 4.0e-27 125.2 118 53.4
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.0e-27 125.2 117 59.0
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 4.0e-27 125.2 114 52.6
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 5.3e-27 124.8 116 57.8
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.3e-27 124.8 122 55.7
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 6.9e-27 124.4 115 57.4
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 6.9e-27 124.4 120 56.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 9.0e-27 124.0 110 57.3
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 9.0e-27 124.0 115 57.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 9.0e-27 124.0 116 57.8
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.5e-26 123.2 115 53.9
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-26 123.2 115 58.3
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 2.0e-26 122.9 120 51.7
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.6e-26 120.9 124 53.2
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 7.6e-26 120.9 115 54.8
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 7.6e-26 120.9 119 52.1
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 9.9e-26 120.6 114 52.6
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.3e-25 120.2 105 58.1
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.3e-25 120.2 103 58.3
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.3e-25 120.2 116 54.3
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.2e-25 119.4 89 64.0
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.2e-25 119.4 117 54.7
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-25 118.6 118 55.1
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 3.8e-25 118.6 135 47.4
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 6.4e-25 117.9 162 42.6
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 8.4e-25 117.5 117 54.7
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 8.4e-25 117.5 117 54.7
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 1.1e-24 117.1 111 55.0
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.9e-24 116.3 114 54.4
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 2.4e-24 115.9 114 54.4
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 2.4e-24 115.9 114 50.0
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 3.2e-24 115.5 114 56.1
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 4.2e-24 115.2 118 53.4
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 4.2e-24 115.2 98 58.2
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 4.2e-24 115.2 114 53.5
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 5.5e-24 114.8 119 49.6
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 5.5e-24 114.8 108 52.8
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 7.1e-24 114.4 111 55.9
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 9.3e-24 114.0 106 54.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 1.2e-23 113.6 112 50.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 1.2e-23 113.6 112 50.9
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.2e-23 113.6 105 56.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.7e-23 112.5 107 52.3
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 2.7e-23 112.5 123 48.0
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.7e-23 112.5 117 53.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 3.5e-23 112.1 121 48.8
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.8e-22 109.8 120 55.0
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 1.8e-22 109.8 123 49.6
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.8e-22 109.8 104 52.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 3.0e-22 109.0 92 60.9
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 6.7e-22 107.8 121 46.3
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.7e-22 107.8 117 51.3
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.1e-21 107.1 60 76.7
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.5e-21 106.7 107 56.1
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.3e-21 105.5 134 47.0
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 5.6e-21 104.8 100 56.0
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 9.6e-21 104.0 118 48.3
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.1e-20 100.9 61 72.1
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 2.4e-19 99.4 86 54.7
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 1.5e-18 96.7 152 40.8
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 2.6e-18 95.9 93 59.1
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.0e-17 94.0 96 58.3
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.0e-17 94.0 96 58.3
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.2e-17 92.8 76 60.5
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.8e-17 92.0 95 55.8
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 8.4e-17 90.9 97 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 3.2e-16 89.0 99 51.5
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 4.2e-16 88.6 74 55.4
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 5.5e-16 88.2 52 71.2
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 9.3e-16 87.4 88 50.0
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 4.6e-15 85.1 106 43.4
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 2.3e-14 82.8 54 68.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 8.7e-14 80.9 121 39.7
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.1e-13 80.5 93 51.6
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.5e-13 80.1 55 61.8
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 2.5e-13 79.3 49 63.3
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 9.6e-13 77.4 94 54.3
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.8e-12 75.9 87 51.7
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 3.7e-12 75.5 73 53.4
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.1e-11 72.4 130 38.5
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 5.9e-10 68.2 50 66.0
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.0e-09 67.4 51 68.6
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.2e-09 66.2 121 40.5
COL.COLO4_27990 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.1e-08 63.9 62 51.6
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 3.0e-06 55.8 37 73.0
CBR_g39054 Chara braunii HOM05D004542 ORTHO05D005380 6.7e-06 54.7 88 37.5


User provided reference genes

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