Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 7.1e-247 857.4 673 100.0
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.1e-82 312.0 532 57.3
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.4e-71 273.5 552 41.1
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 5.8e-71 273.1 563 43.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 5.8e-71 273.1 481 39.5
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 2.2e-70 271.2 549 41.2
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 4.6e-68 263.5 523 51.4
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.3e-67 261.2 511 41.3
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.6e-65 253.8 527 40.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.7e-62 245.0 520 41.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.4e-61 240.0 566 35.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 9.2e-61 239.2 497 36.0
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.5e-60 237.3 483 36.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.0e-59 234.2 518 36.5
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 6.6e-59 233.0 504 40.1
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 7.3e-58 229.6 482 43.4
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 6.8e-56 223.0 530 35.3
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.9e-55 219.2 557 39.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.1e-53 215.7 496 35.1
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 4.1e-53 213.8 504 50.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 9.2e-53 212.6 502 53.2
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 9.2e-53 212.6 501 54.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.3e-51 208.8 496 34.5
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.3e-51 208.0 499 34.9
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.0e-51 207.6 507 49.9
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 5.1e-51 206.8 466 34.8
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.9e-50 204.9 483 35.2
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.5e-50 204.5 495 40.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.3e-50 203.8 513 37.6
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.6e-50 203.4 527 36.2
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 9.6e-50 202.6 508 38.2
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 9.6e-50 202.6 508 38.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.1e-48 199.1 487 50.7
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.0e-48 197.2 512 37.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.2e-47 195.7 510 33.1
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.5e-47 195.3 479 45.1
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.5e-47 195.3 515 35.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.0e-47 194.9 482 34.2
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 4.4e-47 193.7 547 32.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 7.6e-47 193.0 528 33.0
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.7e-46 191.8 550 36.4
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.7e-46 191.8 550 36.4
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 3.8e-46 190.7 479 44.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.4e-46 189.5 507 43.6
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 4.2e-45 187.2 534 33.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.7e-43 181.8 470 45.1
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.9e-43 180.6 518 35.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 6.6e-43 179.9 566 35.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 8.7e-43 179.5 541 34.0
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.7e-43 179.5 504 34.1
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.1e-42 179.1 510 35.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.1e-42 179.1 535 33.5
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.1e-42 179.1 557 36.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.5e-42 178.7 488 35.2
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.5e-42 177.9 585 33.3
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.6e-42 176.8 533 34.5
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 5.6e-42 176.8 509 50.1
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.1e-41 174.9 542 32.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.8e-41 173.7 481 39.7
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 8.1e-41 172.9 466 34.3
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.0e-40 170.6 512 34.0
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 9.0e-40 169.5 466 33.5
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.2e-39 169.1 512 39.5
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.0e-39 168.3 532 34.6
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.6e-39 167.9 513 35.5
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.6e-39 166.4 525 49.0
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 9.9e-39 166.0 482 35.7
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.3e-38 165.6 476 32.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.8e-38 164.1 485 45.4
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 6.4e-38 163.3 472 32.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.9e-37 161.8 479 32.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 3.2e-37 161.0 506 44.1
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 4.2e-37 160.6 510 38.8
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 4.2e-37 160.6 510 38.8
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 7.1e-37 159.8 485 35.1
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 7.1e-37 159.8 174 54.6
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.1e-37 159.8 567 33.0
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 9.3e-37 159.5 483 44.5
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 9.3e-37 159.5 597 32.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-36 159.1 521 33.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.2e-36 159.1 521 33.2
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.6e-36 158.7 212 56.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.1e-36 158.3 500 41.4
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.7e-36 157.9 530 33.2
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.9e-36 156.4 542 31.2
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.0e-35 156.0 485 42.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.8e-35 155.2 514 43.6
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.3e-35 154.8 507 37.7
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.1e-35 153.7 501 42.5
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 5.1e-35 153.7 486 42.8
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 8.7e-35 152.9 441 32.4
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.9e-34 151.8 491 33.0
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 7.4e-34 149.8 170 50.0
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.8e-33 147.9 232 50.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 8.1e-33 146.4 163 54.0
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.1e-32 146.0 227 48.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.8e-32 145.2 169 51.5
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.8e-32 145.2 166 51.2
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 2.4e-32 144.8 214 56.5
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 3.1e-32 144.4 486 32.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 4.0e-32 144.1 166 50.6
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.0e-32 144.1 513 34.1
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 9.0e-32 142.9 166 51.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 2.0e-31 141.7 515 30.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.6e-31 141.4 515 39.8
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 3.4e-31 141.0 494 40.9
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.4e-31 141.0 431 33.4
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 7.6e-31 139.8 168 51.2
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 3.8e-30 137.5 471 30.4
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.8e-30 137.5 202 51.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 6.4e-30 136.7 513 39.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 8.4e-30 136.3 197 51.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.2e-29 134.4 202 48.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.6e-28 132.1 517 42.7
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 6.0e-28 130.2 484 32.4
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 7.9e-28 129.8 504 48.0
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.0e-27 129.4 539 33.2
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.3e-27 129.0 445 33.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 8.7e-27 126.3 514 33.1
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.5e-26 124.8 544 30.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.6e-26 123.6 171 46.8
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 5.6e-26 123.6 188 46.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.6e-26 123.6 502 31.9
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.3e-25 122.5 505 26.5
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.7e-25 120.9 477 30.0
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 4.8e-25 120.6 520 29.2
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.1e-25 119.8 483 31.1
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.4e-24 119.0 424 38.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.8e-24 118.6 177 46.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 6.9e-24 116.7 474 28.5
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 9.0e-24 116.3 143 49.7
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 9.0e-24 116.3 153 49.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.3e-22 112.5 489 27.4
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-21 108.2 170 42.4
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 7.1e-21 106.7 553 30.2
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.7e-19 99.8 174 41.4
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.1e-18 99.4 173 45.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.5e-18 98.2 145 51.0
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 4.3e-18 97.4 169 42.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.1e-17 95.1 169 39.1
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.7e-17 94.4 147 41.5
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 6.3e-17 93.6 503 25.6
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.2e-17 93.2 189 34.9
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.4e-16 92.4 170 40.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.4e-16 91.7 153 51.6
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 4.1e-16 90.9 186 38.2
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.1e-16 90.9 476 25.6
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 1.2e-15 89.4 162 43.8
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.4e-15 87.8 456 26.8
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.7e-14 85.5 186 36.0
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.5e-14 83.6 107 46.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 7.2e-13 80.1 537 25.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 9.3e-13 79.7 472 29.2
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.2e-12 79.3 169 39.6
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 1.6e-12 79.0 170 38.2
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.0e-11 76.3 112 40.2
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.3e-11 75.1 457 24.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.9e-11 74.3 112 43.8
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 8.7e-11 73.2 126 39.7
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.1e-10 72.8 149 33.6
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.9e-10 72.0 474 25.7
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.6e-09 68.9 143 39.2
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.8e-09 68.2 472 35.4
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.8e-09 68.2 151 38.4
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.8e-09 67.4 146 36.3
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 8.2e-09 66.6 88 46.6
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.8e-08 65.5 486 22.6
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 3.1e-08 64.7 123 35.8
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 6.9e-08 63.5 174 32.8
Pp3c20_3960 Physcomitrium patens HOM05D025130 ORTHO05D030134 1.5e-07 62.4 169 30.2
Pp3c20_4020 Physcomitrium patens HOM05D025130 ORTHO05D030134 1.5e-07 62.4 169 30.2
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.4e-07 61.2 96 40.6
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.0e-06 59.7 149 35.6
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 1.3e-06 59.3 176 33.0
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.7e-06 58.9 153 34.6
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 1.7e-06 58.9 42 69.0
AagrBONN_evm.TU.Sc2ySwM_117.778 Anthoceros agrestis HOM05D025130 ORTHO05D004035 2.9e-06 58.2 145 32.4


User provided reference genes

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