Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00163 Eucalyptus grandis HOM05D000169 ORTHO05D007693 7.5e-79 297.0 136 100.0
Eucgr.D00173 Eucalyptus grandis HOM05D000169 ORTHO05D007693 3.6e-49 198.4 111 82.0
Actinidia33686 Actinidia chinensis HOM05D000169 ORTHO05D007693 4.2e-29 131.7 106 55.7
COL.COLO4_26837 Corchorus olitorius HOM05D000169 ORTHO05D007693 1.2e-28 130.2 116 51.7
Rhsim13G0121500 Rhododendron simsii HOM05D000169 ORTHO05D007693 6.0e-28 127.9 105 54.3
PGR083G1101 Punica granatum HOM05D000169 ORTHO05D007693 1.0e-27 127.1 112 49.1
Gohir.D05G111000 Gossypium hirsutum HOM05D000169 ORTHO05D007693 5.1e-27 124.8 116 47.4
Gorai.009G115300 Gossypium raimondii HOM05D000169 ORTHO05D007693 5.1e-27 124.8 116 47.4
Peaxi162Scf00276g00122 Petunia axillaris HOM05D000169 ORTHO05D007693 6.7e-27 124.4 105 51.4
CSS0003732 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D007693 8.7e-27 124.0 106 51.9
MD05G1272800 Malus domestica HOM05D000169 ORTHO05D007693 8.7e-27 124.0 109 52.3
Thecc.06G002500 Theobroma cacao HOM05D000169 ORTHO05D007693 1.1e-26 123.6 116 48.3
Gohir.A05G110600 Gossypium hirsutum HOM05D000169 ORTHO05D007693 1.9e-26 122.9 116 46.6
Lj2C330T2 Lonicera japonica HOM05D000169 ORTHO05D007693 2.5e-26 122.5 108 51.9
Solyc02g069920.4 Solanum lycopersicum HOM05D000169 ORTHO05D007693 3.3e-26 122.1 97 55.7
CAN.G79.33 Capsicum annuum HOM05D000169 ORTHO05D007693 4.3e-26 121.7 97 55.7
Prupe.4G090600 Prunus persica HOM05D000169 ORTHO05D007693 9.7e-26 120.6 103 53.4
Ciclev10017814m.g Citrus clementina HOM05D000169 ORTHO05D007693 1.3e-25 120.2 95 54.7
THA.LOC104812864 Tarenaya hassleriana HOM05D000356 ORTHO05D007693 1.6e-25 119.8 97 54.6
THA.LOC104814347 Tarenaya hassleriana HOM05D000356 ORTHO05D007693 1.6e-25 119.8 97 54.6
Cfa000807 Carpinus fangiana HOM05D000169 ORTHO05D007693 2.2e-25 119.4 108 51.9
Haze_05866 Corylus avellana HOM05D000169 ORTHO05D007693 2.2e-25 119.4 108 51.9
Dinv10791 Davidia involucrata HOM05D000169 ORTHO05D007693 2.2e-25 119.4 110 49.1
Nitab4.5_0001583g0010 Nicotiana tabacum HOM05D000169 ORTHO05D007693 2.2e-25 119.4 92 57.6
PGSC0003DMG400021188 Solanum tuberosum HOM05D000169 ORTHO05D007693 2.2e-25 119.4 97 54.6
Lalb_Chr20g0120061 Lupinus albus HOM05D000169 ORTHO05D007693 2.8e-25 119.0 117 46.2
Sopen02g019060 Solanum pennellii HOM05D000169 ORTHO05D007693 2.8e-25 119.0 97 54.6
VMungo0540G1641 Vigna mungo HOM05D000169 ORTHO05D007693 3.7e-25 118.6 94 54.3
arahy.Tifrunner.gnm1.ann1.D0AYNK Arachis hypogaea HOM05D000169 ORTHO05D007693 4.8e-25 118.2 96 56.2
arahy.Tifrunner.gnm1.ann1.T5Y52R Arachis hypogaea HOM05D000169 ORTHO05D007693 4.8e-25 118.2 96 56.2
Cc09_g04180 Coffea canephora HOM05D000169 ORTHO05D007693 4.8e-25 118.2 95 55.8
Nitab4.5_0001225g0090 Nicotiana tabacum HOM05D000169 ORTHO05D007693 4.8e-25 118.2 97 54.6
Phvul.006G128100 Phaseolus vulgaris HOM05D000169 ORTHO05D007693 4.8e-25 118.2 94 53.2
Aa31LG6G11770 Aethionema arabicum HOM05D000169 ORTHO05D007693 6.3e-25 117.9 102 53.9
FAN16G2954 Fragaria x ananassa HOM05D000169 ORTHO05D007693 6.3e-25 117.9 95 51.6
RcHm_v2.0_Chr5g0016071 Rosa chinensis HOM05D000169 ORTHO05D007693 6.3e-25 117.9 98 54.1
vmacro03383 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 6.3e-25 117.9 92 54.3
GSVIVG01021658001 Vitis vinifera HOM05D000169 ORTHO05D007693 6.3e-25 117.9 108 50.9
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.1e-24 117.1 100 50.0
MELO3C007073.2 Cucumis melo HOM05D000169 ORTHO05D007693 1.8e-24 116.3 97 50.5
QL05p062500 Quercus lobata HOM05D000169 ORTHO05D007693 1.8e-24 116.3 95 54.7
TWI15G0677 Tripterygium wilfordii HOM05D000169 ORTHO05D007693 1.8e-24 116.3 113 50.4
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 2.4e-24 115.9 98 58.2
C05p29540 Brassica napus HOM05D000169 ORTHO05D007693 2.4e-24 115.9 98 58.2
BolC5t31685H Brassica oleracea HOM05D000169 ORTHO05D007693 2.4e-24 115.9 98 58.2
CiPaw.10G109200 Carya illinoinensis HOM05D000169 ORTHO05D007693 2.4e-24 115.9 97 53.6
Ca_00844_v3 Cicer arietinum L. HOM05D000169 ORTHO05D007693 2.4e-24 115.9 97 53.6
Medtr2g030240 Medicago truncatula HOM05D000356 ORTHO05D007693 2.4e-24 115.9 98 55.1
BcaB07g32664 Brassica carinata HOM05D000356 ORTHO05D007693 3.1e-24 115.5 98 58.2
Psat1g167440 Pisum sativum HOM05D000169 ORTHO05D007693 3.1e-24 115.5 96 53.1
Duzib235G0404 Durio zibethinus HOM05D000169 ORTHO05D007693 4.1e-24 115.2 115 43.5
ECA236G2888 Erigeron canadensis HOM05D000169 ORTHO05D007693 4.1e-24 115.2 97 54.6
MD10G1252900 Malus domestica HOM05D000169 ORTHO05D007693 4.1e-24 115.2 93 55.9
Sabra11G0141000 Salix brachista HOM05D002312 ORTHO05D006455 4.1e-24 115.2 100 49.0
CsaV3_6G052370 Cucumis sativus L. HOM05D000169 ORTHO05D007693 5.3e-24 114.8 91 52.7
Potri.011G164100 Populus trichocarpa HOM05D000169 ORTHO05D007693 6.9e-24 114.4 110 46.4
Thhalv10007264m.g Eutrema salsugineum HOM05D000169 ORTHO05D007693 9.0e-24 114.0 97 55.7
Glyma.09G024500 Glycine max HOM05D000169 ORTHO05D007693 9.0e-24 114.0 117 43.6
Manes.03G112150 Manihot esculenta HOM05D000169 ORTHO05D007693 9.0e-24 114.0 95 52.6
CARHR029940 Cardamine hirsuta HOM05D000169 ORTHO05D007693 1.2e-23 113.6 100 56.0
Atru.chr10.844 Acer truncatum HOM05D000169 ORTHO05D007693 1.5e-23 113.2 94 53.2
Aqoxy1G00111 Aquilegia oxysepala HOM05D000356 ORTHO05D007693 1.5e-23 113.2 90 53.3
HanXRQChr04g0116481 Helianthus annuus HOM05D000169 ORTHO05D007693 1.5e-23 113.2 89 53.9
Hund19369 Selenicereus undatus HOM05D000169 ORTHO05D007693 2.0e-23 112.8 89 55.1
CANSAT35G1370 Cannabis sativa HOM05D000169 ORTHO05D007693 2.6e-23 112.5 91 52.7
Lj6g0025648 Lotus japonicus HOM05D000169 ORTHO05D007693 2.6e-23 112.5 100 50.0
BraA09t39117Z Brassica rapa HOM05D000169 ORTHO05D007693 3.4e-23 112.1 97 56.7
FvH4_3g10160 Fragaria vesca HOM05D000169 ORTHO05D007693 3.4e-23 112.1 98 51.0
A09p35920 Brassica napus HOM05D000169 ORTHO05D007693 4.5e-23 111.7 100 55.0
CDE06G2571 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 5.9e-23 111.3 84 59.5
FAN11G3594 Fragaria x ananassa HOM05D000169 ORTHO05D007693 5.9e-23 111.3 98 51.0
FAN25G2274 Fragaria x ananassa HOM05D000169 ORTHO05D007693 5.9e-23 111.3 98 51.0
Sed0014236 Sechium edule HOM05D000169 ORTHO05D007693 5.9e-23 111.3 95 50.5
ClCG01G025160 Citrullus lanatus HOM05D000169 ORTHO05D007693 1.0e-22 110.5 95 49.5
Glyma.15G130500 Glycine max HOM05D000169 ORTHO05D007693 1.0e-22 110.5 117 41.9
TPR.G26348 Trifolium pratense HOM05D000169 ORTHO05D007693 1.0e-22 110.5 96 53.1
TAR627G0736 Trochodendron aralioides HOM05D000169 ORTHO05D007693 1.0e-22 110.5 93 48.4
FAN21G3676 Fragaria x ananassa HOM05D000169 ORTHO05D007693 1.3e-22 110.2 92 53.3
DCAR_004839 Daucus carota HOM05D000169 ORTHO05D007693 2.2e-22 109.4 88 55.7
DCAR_004840 Daucus carota HOM05D000169 ORTHO05D007693 2.2e-22 109.4 88 55.7
AT1G30520 Arabidopsis thaliana HOM05D000169 ORTHO05D007693 2.9e-22 109.0 102 53.9
Sp1g26370 Schrenkiella parvula HOM05D000169 ORTHO05D007693 2.9e-22 109.0 104 50.0
AL1G44564 Arabidopsis lyrata HOM05D000169 ORTHO05D007693 8.5e-22 107.5 104 55.8
AUR62029373 Chenopodium quinoa HOM05D000169 ORTHO05D007693 1.1e-21 107.1 89 52.8
Carub.0001s2876 Capsella rubella HOM05D000169 ORTHO05D007693 1.4e-21 106.7 97 55.7
Sc10g0005430 Simmondsia chinensis HOM05D000169 ORTHO05D007693 1.9e-21 106.3 100 53.0
Sc10g0006290 Simmondsia chinensis HOM05D000169 ORTHO05D007693 1.9e-21 106.3 100 53.0
unitig_21.g20626 Utricularia gibba HOM05D000169 ORTHO05D007693 1.9e-21 106.3 92 52.2
Lsat_1_v5_gn_7_27381 Lactuca sativa HOM05D000169 ORTHO05D007693 2.5e-21 105.9 90 53.3
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 2.5e-21 105.9 93 54.8
Nn4g26677 Nelumbo nucifera HOM05D000356 ORTHO05D007693 4.2e-21 105.1 106 47.2
CiPaw.09G141800 Carya illinoinensis HOM05D000169 ORTHO05D007693 5.5e-21 104.8 93 50.5
Migut.H01327 Erythranthe guttata HOM05D000169 ORTHO05D007693 7.2e-21 104.4 89 55.1
MSTRG.16293 Avicennia marina HOM05D000169 ORTHO05D007693 1.6e-20 103.2 91 50.5
Zm00001eb261830 Zea mays HOM05D000169 ORTHO05D007693 2.7e-20 102.4 96 50.0
PSO675G1789 Papaver somniferum HOM05D000169 ORTHO05D007693 3.6e-20 102.1 110 46.4
PSO675G5523 Papaver somniferum HOM05D000169 ORTHO05D007693 4.6e-20 101.7 111 47.7
ATR0165G033 Amborella trichopoda HOM05D000169 ORTHO05D007693 7.9e-20 100.9 93 50.5
EL10Ac1g01132 Beta vulgaris HOM05D000169 ORTHO05D007693 1.4e-19 100.1 90 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4712 Anthoceros agrestis HOM05D000169 ORTHO05D007693 7.4e-18 94.4 95 48.4
SEGI_10060 Sequoiadendron giganteum HOM05D000169 ORTHO05D007693 9.7e-18 94.0 95 46.3
SalBow7G0208 Salvia bowleyana HOM05D000169 ORTHO05D007693 4.8e-17 91.7 89 47.2
Ah.04g153410 Amaranthus hybridus HOM05D000169 ORTHO05D007693 1.8e-16 89.7 91 46.2
SMO119G0066 Selaginella moellendorffii HOM05D000169 ORTHO05D007693 2.0e-15 86.3 90 45.6
Pp3c10_3810 Physcomitrium patens HOM05D000169 ORTHO05D007693 5.5e-13 78.2 107 38.3
BcaB07g32688 Brassica carinata HOM05D000169 ORTHO05D007693 7.2e-13 77.8 64 56.2
Mapoly0097s0040 Marchantia polymorpha HOM05D000356 ORTHO05D007693 2.3e-11 72.8 75 42.7
vmacro03452 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 6.7e-11 71.2 92 38.0
CDE03G0252 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 8.8e-11 70.9 81 44.4
PRCOL_00003528 Prasinoderma coloniale HOM05D000169 ORTHO05D007693 2.6e-10 69.3 107 34.6
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.7e-06 56.6 44 52.3
Aa31LG8G3300 Aethionema arabicum HOM05D000169 ORTHO05D004780 3.8e-06 55.5 82 40.2
Prupe.3G065200 Prunus persica HOM05D000169 ORTHO05D004780 5.0e-06 55.1 85 38.8
Medtr1569s0010 Medicago truncatula HOM05D000169 ORTHO05D004437 6.5e-06 54.7 101 31.7


User provided reference genes

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