Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 7.1e-248 860.1 436 100.0
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 3.5e-186 655.2 384 82.0
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 2.0e-157 559.7 441 65.5
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 3.8e-156 555.4 441 65.3
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 2.4e-155 552.7 434 65.2
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 3.1e-150 535.8 434 65.7
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.0e-150 535.4 392 64.3
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 4.0e-150 535.4 427 64.2
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 4.5e-149 531.9 383 65.3
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.2e-148 529.6 385 65.2
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 1.4e-147 526.9 381 64.8
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 2.4e-147 526.2 385 62.9
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 5.4e-147 525.0 440 63.9
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 1.6e-146 523.5 438 63.5
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 6.0e-146 521.5 444 62.8
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 6.7e-145 518.1 388 62.1
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 8.7e-145 517.7 380 63.2
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 1.9e-144 516.5 388 61.6
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 4.3e-144 515.4 390 61.5
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.3e-143 513.8 443 56.4
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.8e-143 512.7 382 61.8
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 3.7e-143 512.3 444 60.1
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 8.1e-143 511.1 382 61.5
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 3.1e-142 509.2 438 62.6
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.5e-141 506.9 438 61.4
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.6e-141 506.1 382 61.5
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 3.4e-141 505.8 382 60.7
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 5.8e-141 505.0 387 60.7
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 5.8e-141 505.0 384 61.2
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 1.3e-140 503.8 383 61.4
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 1.7e-140 503.4 438 60.7
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 1.1e-139 500.7 384 59.9
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 1.4e-139 500.4 384 61.5
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 3.2e-139 499.2 387 59.7
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 3.2e-139 499.2 386 61.1
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 5.5e-139 498.4 370 63.2
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 9.3e-139 497.7 374 61.5
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 9.3e-139 497.7 383 61.4
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 2.7e-138 496.1 376 59.8
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 2.7e-138 496.1 445 60.7
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 3.5e-138 495.7 390 61.0
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 7.9e-138 494.6 387 59.2
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 1.0e-137 494.2 383 61.1
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.8e-137 493.4 387 58.4
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.8e-137 493.4 390 59.0
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.3e-137 493.0 384 59.6
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 6.7e-137 491.5 374 60.7
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 6.7e-137 491.5 438 61.2
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 8.7e-137 491.1 380 60.5
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 8.7e-137 491.1 378 61.9
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 1.5e-136 490.3 385 59.0
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 1.9e-136 490.0 383 59.0
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 4.3e-136 488.8 384 58.6
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 4.3e-136 488.8 422 61.4
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 1.3e-135 487.3 438 62.8
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 1.6e-135 486.9 438 62.8
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 2.4e-134 483.0 386 58.3
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 4.0e-134 482.3 382 59.4
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 9.0e-134 481.1 388 59.5
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 1.2e-133 480.7 384 59.4
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 1.3e-132 477.2 383 58.0
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 2.9e-132 476.1 381 58.5
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 6.5e-132 474.9 372 59.1
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 6.5e-132 474.9 431 60.6
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 2.5e-131 473.0 370 59.5
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 3.2e-131 472.6 379 59.6
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 3.2e-131 472.6 379 59.6
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 4.2e-131 472.2 379 60.4
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 5.5e-131 471.9 381 60.1
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 5.5e-131 471.9 380 60.8
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 2.1e-130 469.9 436 59.9
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 2.1e-130 469.9 387 57.9
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 4.6e-130 468.8 390 57.9
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.0e-129 466.1 437 59.5
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.5e-128 463.8 436 59.6
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 2.5e-128 463.0 384 58.1
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 5.7e-128 461.8 428 58.4
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 5.7e-128 461.8 384 58.9
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 5.7e-128 461.8 381 58.8
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 7.4e-128 461.5 439 52.6
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 2.8e-127 459.5 376 59.3
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 6.3e-127 458.4 379 56.7
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 1.8e-126 456.8 377 57.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.1e-126 456.1 428 57.2
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 4.5e-125 452.2 353 60.3
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 1.3e-124 450.7 380 56.6
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 4.2e-123 445.7 389 56.6
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 4.2e-123 445.7 353 59.8
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 5.5e-123 445.3 380 57.9
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 7.9e-122 441.4 347 59.1
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 7.9e-122 441.4 386 54.7
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 7.9e-122 441.4 375 57.9
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 1.4e-121 440.7 374 56.7
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 3.7e-119 432.6 377 56.0
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.4e-118 430.6 375 56.0
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 2.0e-117 426.8 385 55.6
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 2.0e-117 426.8 335 59.4
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 5.9e-117 425.2 397 54.9
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 1.3e-116 424.1 336 58.3
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 6.5e-116 421.8 384 56.0
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 1.1e-115 421.0 389 54.2
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 8.8e-113 411.4 435 50.1
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 2.4e-110 403.3 387 51.2
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.9e-108 396.4 465 52.3
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 2.4e-102 376.7 278 62.2
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 3.5e-101 372.9 278 61.9
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 6.5e-100 368.6 375 51.7
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 2.5e-99 366.7 287 61.0
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 8.8e-97 358.2 396 47.5
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 5.7e-96 355.5 380 48.9
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.7e-92 344.0 372 47.6
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.5e-88 330.9 445 45.2
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.7e-88 328.9 397 43.3
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 3.7e-87 326.2 395 44.3
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 3.1e-86 323.2 435 43.0
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 5.4e-86 322.4 376 46.8
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 1.3e-84 317.8 351 47.6
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 5.0e-84 315.8 426 41.3
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 1.6e-77 294.3 366 42.3
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.3e-75 286.6 298 48.7
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.6e-74 284.3 308 57.1
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 3.6e-66 256.5 192 59.4
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 2.3e-65 253.8 459 35.7
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 5.2e-65 252.7 347 42.4
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.7e-55 221.1 133 77.4
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 2.1e-50 204.1 223 50.7
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 4.9e-47 193.0 176 50.6
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.1e-46 191.8 171 55.0
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 2.6e-40 170.6 108 66.7
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 1.3e-39 168.3 196 46.9
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 2.2e-39 167.5 141 55.3
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 1.7e-36 157.9 163 47.2
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 4.8e-34 149.8 451 30.2
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 4.8e-34 149.8 114 59.6
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 7.6e-32 142.5 382 31.4
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.8e-31 140.2 144 45.8
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 3.8e-31 140.2 83 68.7
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 8.4e-31 139.0 88 67.0
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 7.9e-29 132.5 400 29.2
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 1.8e-28 131.3 77 71.4
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 1.9e-27 127.9 141 49.6
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 7.4e-27 125.9 123 55.3
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 1.9e-22 111.3 167 41.9
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.5e-19 100.9 208 32.7
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 4.8e-18 96.7 112 43.8
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 9.0e-17 92.4 66 63.6
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 9.3e-14 82.4 52 65.4
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 1.2e-13 82.0 56 67.9
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 1.5e-11 75.1 369 23.3
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 2.5e-11 74.3 404 25.5
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.3e-10 72.0 369 23.0
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 1.1e-09 68.9 374 24.1
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 1.4e-09 68.6 402 23.4
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 1.8e-09 68.2 354 23.7
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 5.3e-09 66.6 374 23.0
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 5.3e-09 66.6 358 24.0
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 5.3e-09 66.6 372 23.7
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.5e-08 65.1 40 72.5
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 2.0e-08 64.7 380 23.7
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 3.4e-08 63.9 77 41.6
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 4.5e-08 63.5 355 23.7
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 5.9e-08 63.2 371 22.4
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 7.7e-08 62.8 116 34.5
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.0e-07 62.4 369 22.0
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 1.0e-07 62.4 394 24.4
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.0e-07 62.4 354 25.1
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 1.0e-07 62.4 387 22.5
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.3e-07 62.0 356 22.8
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 2.2e-07 61.2 373 24.4
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.9e-07 60.8 371 21.8
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 3.8e-07 60.5 369 23.3
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 6.5e-07 59.7 56 48.2
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 8.5e-07 59.3 373 20.4
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.1e-06 58.9 362 23.8
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 1.9e-06 58.2 408 22.8
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.9e-06 58.2 360 24.7
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 3.2e-06 57.4 376 23.7
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 5.5e-06 56.6 382 20.9
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 5.5e-06 56.6 356 22.5
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 7.2e-06 56.2 360 21.1
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 7.2e-06 56.2 375 21.3
Prupe.1G401000 Prunus persica HOM05D000344 ORTHO05D000934 9.4e-06 55.8 63 44.4


User provided reference genes

Program Settings