Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2744.9 1385 100.0
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2391.7 1386 85.7
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2381.7 1389 85.4
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2376.7 1389 85.3
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2373.2 1388 85.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2372.4 1386 85.2
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2370.5 1387 85.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2366.7 1387 84.3
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2361.6 1388 84.6
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2361.3 1388 84.7
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2360.1 1393 84.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2353.6 1388 85.2
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2353.2 1387 84.5
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2352.4 1378 86.4
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2350.5 1388 84.2
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2349.3 1388 84.4
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2345.5 1387 84.2
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2343.5 1399 83.5
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2343.2 1388 84.1
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2340.1 1387 83.9
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2337.0 1387 84.6
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2335.1 1389 84.0
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2329.7 1388 83.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2319.3 1389 83.3
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2318.5 1388 82.8
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2314.7 1388 84.1
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2304.6 1344 85.0
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2300.4 1387 82.5
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2296.9 1390 81.2
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2295.4 1389 81.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2286.9 1391 81.2
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2285.0 1387 83.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2280.0 1390 80.5
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2279.6 1390 80.6
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2276.9 1387 80.7
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2275.4 1390 80.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2265.3 1432 80.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2263.8 1387 80.4
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2263.0 1388 80.5
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2261.5 1481 76.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2259.2 1389 80.4
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2258.4 1387 80.5
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2257.3 1390 81.6
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2256.9 1392 79.7
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2254.9 1424 80.4
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2252.6 1389 80.3
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2251.5 1403 81.7
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1389 80.8
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1395 80.2
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2235.3 1391 79.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2228.0 1388 79.9
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2224.1 1406 79.4
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2221.0 1401 78.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2216.0 1405 79.2
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2215.3 1400 79.1
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2209.9 1388 79.4
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2208.3 1405 78.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2204.5 1388 79.7
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2201.8 1413 78.5
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2201.4 1387 79.4
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2198.3 1401 78.7
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2196.8 1402 78.5
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2195.6 1388 78.7
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2195.2 1402 78.6
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2194.5 1484 74.8
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2193.7 1417 77.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2190.2 1395 78.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2186.8 1402 78.0
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2186.8 1402 78.1
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1399 78.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2169.8 1389 78.3
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2169.4 1412 77.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2159.4 1372 78.9
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2154.8 1253 85.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2118.2 1415 76.5
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2083.5 1223 84.1
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2051.9 1697 64.4
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2023.4 1354 75.9
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2019.2 1354 75.8
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2016.1 1350 75.4
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1987.2 1302 77.0
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1972.2 1440 71.2
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1928.7 1191 80.0
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1926.0 1374 72.9
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1922.1 1333 72.7
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1914.0 1377 70.0
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1863.2 1382 68.5
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1848.2 1389 67.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1785.0 1531 62.7
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1498.0 930 79.5
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1483.0 1156 64.7
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1429.5 821 86.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1410.2 1413 52.7
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1378.2 977 72.5
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1363.6 1418 50.3
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1348.6 1396 49.7
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1344.3 1345 51.2
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1240.3 715 87.0
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1212.6 815 75.5
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1208.0 881 68.2
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1184.9 761 77.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1156.7 791 74.8
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.2e-296 1023.8 588 85.0
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 5.7e-283 978.4 816 58.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.2e-258 896.7 601 75.2
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 6.0e-216 755.7 515 74.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 3.8e-210 736.5 485 77.9
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 2.0e-195 687.6 552 65.0
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 5.9e-187 659.4 1479 29.4
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.2e-163 582.0 525 60.2
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.0e-146 524.2 366 72.1
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.7e-139 501.1 536 51.3
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 4.3e-121 440.7 538 49.8
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.1e-103 382.9 269 69.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.2e-94 352.8 215 77.7
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.2e-85 322.0 192 79.2
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-84 319.3 418 46.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 9.1e-71 273.5 299 51.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.8e-61 241.5 145 81.4
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.0e-54 219.2 140 75.7
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.7e-46 192.2 165 61.2
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.0e-41 176.0 133 71.4
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 3.8e-37 161.8 116 72.4
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 4.4e-33 148.3 91 82.4
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 9.8e-33 147.1 155 47.7
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.1e-31 143.7 84 84.5
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 1.4e-31 143.3 87 73.6
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.2e-30 140.2 112 64.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.3e-29 136.7 83 73.5
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 4.3e-28 131.7 105 60.0
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 9.5e-28 130.6 101 67.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 5.2e-26 124.8 154 53.2
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 2.0e-25 122.9 86 70.9
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 8.3e-24 117.5 239 37.2
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 3.5e-22 112.1 165 40.6
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 8.6e-21 107.5 98 52.0
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.5e-20 106.7 68 80.9
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.8e-18 99.8 89 51.7
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.0e-18 98.6 127 47.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.5e-17 96.7 111 50.5
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.9e-17 94.0 53 86.8
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.4e-15 88.2 50 88.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 3.9e-13 82.0 54 75.9
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.5e-12 80.1 45 86.7
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 5.6e-12 78.2 100 45.0
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 1.2e-11 77.0 42 90.5
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.1e-10 72.4 50 66.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 3.1e-10 72.4 50 66.0
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.2e-08 66.2 71 59.2
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.2e-08 66.2 71 59.2
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.2e-08 66.2 71 59.2
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 2.2e-08 66.2 71 59.2
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 38 86.8
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 6.4e-08 64.7 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.1e-07 62.0 67 58.2


User provided reference genes

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