Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 8.7e-51 203.4 104 100.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.6e-41 172.6 103 82.5
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.1e-41 172.2 100 85.0
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 2.1e-41 172.2 99 84.8
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 3.6e-41 171.4 102 82.4
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.1e-40 169.9 100 83.0
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.4e-40 169.5 100 82.0
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 3.1e-40 168.3 100 80.0
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.1e-40 168.3 102 81.4
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 5.3e-40 167.5 103 80.6
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 9.0e-40 166.8 100 81.0
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 1.2e-39 166.4 98 83.7
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 1.5e-39 166.0 101 80.2
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 2.0e-39 165.6 99 79.8
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 2.6e-39 165.2 100 80.0
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.6e-39 165.2 101 78.2
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 2.6e-39 165.2 97 83.5
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.6e-39 165.2 101 80.2
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 3.4e-39 164.9 104 76.0
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 4.5e-39 164.5 100 79.0
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 4.5e-39 164.5 100 77.0
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 5.8e-39 164.1 98 82.7
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 5.8e-39 164.1 101 80.2
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 7.6e-39 163.7 100 79.0
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 7.6e-39 163.7 100 79.0
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 9.9e-39 163.3 104 79.8
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.3e-38 162.9 100 79.0
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 1.3e-38 162.9 99 77.8
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.3e-38 162.9 100 79.0
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-38 162.5 100 79.0
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.9e-38 161.8 101 76.2
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 4.9e-38 161.0 103 78.6
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 4.9e-38 161.0 99 76.8
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 4.9e-38 161.0 99 76.8
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 4.9e-38 161.0 98 78.6
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 6.4e-38 160.6 98 78.6
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 6.4e-38 160.6 98 78.6
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 8.4e-38 160.2 101 75.2
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 8.4e-38 160.2 100 78.0
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 1.4e-37 159.5 100 77.0
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.9e-37 159.1 100 75.0
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.9e-37 159.1 100 75.0
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 3.2e-37 158.3 98 75.5
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 3.2e-37 158.3 100 74.0
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.2e-37 157.9 98 77.6
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 4.2e-37 157.9 104 72.1
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 75.0
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 75.0
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 75.0
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 76.0
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 76.0
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 4.2e-37 157.9 100 76.0
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 5.4e-37 157.5 99 74.7
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 7.1e-37 157.1 100 75.0
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 7.1e-37 157.1 100 76.0
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 9.3e-37 156.8 100 74.0
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 9.3e-37 156.8 94 78.7
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 9.3e-37 156.8 100 76.0
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.2e-36 156.4 98 76.5
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.6e-36 156.0 100 73.0
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.6e-36 156.0 100 73.0
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.6e-36 156.0 99 74.7
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.1e-36 155.6 99 72.7
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.1e-36 155.6 105 74.3
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 2.7e-36 155.2 105 74.3
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.7e-36 155.2 100 75.0
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 3.5e-36 154.8 94 79.8
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 3.5e-36 154.8 100 75.0
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 4.6e-36 154.5 100 74.0
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 4.6e-36 154.5 100 73.0
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.6e-36 154.5 100 74.0
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 6.0e-36 154.1 100 73.0
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 7.9e-36 153.7 100 74.0
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 7.9e-36 153.7 100 74.0
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 7.9e-36 153.7 99 73.7
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 7.9e-36 153.7 100 73.0
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.0e-35 153.3 99 71.7
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 1.0e-35 153.3 103 72.8
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 1.3e-35 152.9 98 73.5
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.3e-35 152.9 100 74.0
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.8e-35 152.5 100 73.0
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-35 152.5 100 72.0
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.8e-35 152.5 100 72.0
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 1.8e-35 152.5 99 71.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.8e-35 152.5 100 73.0
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.8e-35 152.5 99 71.7
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.8e-35 152.5 99 72.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 2.3e-35 152.1 99 72.7
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.3e-35 152.1 100 72.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.3e-35 152.1 100 72.0
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 3.0e-35 151.8 100 72.0
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 3.9e-35 151.4 99 71.7
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.1e-34 149.8 100 72.0
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 1.5e-34 149.4 99 69.7
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 2.5e-34 148.7 99 70.7
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.3e-34 148.3 96 70.8
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.3e-34 148.3 96 70.8
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.3e-34 148.3 96 70.8
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 68.4
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 5.6e-34 147.5 98 68.4
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 9.6e-34 146.7 96 69.8
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.3e-33 146.4 104 68.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.3e-33 146.4 98 71.4
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.6e-33 146.0 98 72.4
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.6e-33 146.0 101 68.3
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 104 67.3
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 2.1e-33 145.6 98 70.4
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 4.8e-33 144.4 100 70.0
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 8.1e-33 143.7 102 69.6
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 8.1e-33 143.7 95 73.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 8.1e-33 143.7 95 73.7
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.4e-32 142.9 100 67.0
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.4e-32 142.9 98 70.4
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 1.8e-32 142.5 95 71.6
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.1e-32 141.7 94 71.3
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 6.9e-32 140.6 101 67.3
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-31 139.4 97 72.2
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 2.0e-31 139.0 97 72.2
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 2.6e-31 138.7 97 72.2
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 7.6e-31 137.1 97 72.2
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 7.6e-31 137.1 97 72.2
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 8.4e-30 133.7 98 66.3
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.4e-24 116.3 71 74.6
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.8e-24 115.9 73 72.6
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 6.9e-24 114.0 161 42.9
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.5e-23 112.8 104 58.7
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.5e-23 112.8 104 58.7
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.3e-22 109.8 68 70.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.7e-22 109.4 74 63.5
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 8.4e-22 107.1 70 65.7
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.4e-21 106.3 90 58.9
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 5.5e-21 104.4 70 64.3
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 7.2e-21 104.0 70 64.3
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 3.5e-20 101.7 68 66.2
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-19 99.4 62 75.8
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 2.3e-19 99.0 71 60.6
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-18 96.7 100 54.0
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 7.4e-18 94.0 85 57.6
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 2.8e-17 92.0 86 53.5
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.9e-16 87.4 88 48.9
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.5e-14 80.9 98 46.9
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 7.2e-13 77.4 44 75.0
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.2e-12 76.6 83 47.0
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 5.7e-10 67.8 75 50.7
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 5.7e-10 67.8 61 49.2
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 8.2e-09 63.9 85 49.4


User provided reference genes

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