Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.9e-74 282.3 138 100.0
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.2e-69 264.6 138 95.7
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.7e-66 253.4 138 92.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-64 250.0 130 95.4
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 3.5e-55 218.4 137 74.5
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.5e-54 214.2 137 73.0
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 2.5e-53 212.2 137 73.7
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 5.5e-53 211.1 137 72.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.6e-52 209.5 137 70.8
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 2.1e-52 209.1 137 71.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.4e-51 206.5 137 67.9
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.3e-51 205.7 137 71.5
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 2.3e-51 205.7 137 70.8
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 3.9e-51 204.9 137 70.1
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 8.8e-51 203.8 136 67.6
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-50 203.4 137 67.2
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.1e-50 203.4 137 70.1
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-50 203.0 137 66.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.3e-50 201.8 137 66.4
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 7.4e-50 200.7 137 70.1
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.4e-50 200.7 137 71.5
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.8e-49 198.7 137 65.0
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 2.8e-49 198.7 137 65.0
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 2.8e-49 198.7 137 67.9
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.7e-49 198.4 137 64.2
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 3.7e-49 198.4 137 65.0
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.8e-49 198.0 137 65.7
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 6.3e-49 197.6 137 68.6
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 68.6
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 68.6
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.1e-48 196.8 137 65.7
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.8e-48 196.1 137 66.4
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.8e-48 196.1 137 67.9
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 2.4e-48 195.7 137 65.7
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.4e-48 195.7 137 67.9
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.4e-48 195.7 137 66.4
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.3e-48 194.5 137 67.9
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.3e-48 194.5 138 66.7
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 7.0e-48 194.1 137 65.7
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.1e-48 193.7 137 65.0
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.6e-47 193.0 137 67.2
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.0e-47 192.6 137 67.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.6e-47 192.2 137 65.0
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.6e-47 192.2 137 65.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.6e-47 192.2 137 65.7
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 2.6e-47 192.2 138 65.9
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 2.6e-47 192.2 137 66.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.5e-47 191.8 136 66.9
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.9e-47 191.0 137 62.0
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 5.9e-47 191.0 137 63.5
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.7e-47 190.7 137 66.4
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.7e-47 190.7 137 66.4
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 7.7e-47 190.7 137 63.5
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.2e-46 189.1 137 61.3
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.2e-46 189.1 137 65.7
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.9e-46 188.7 137 66.4
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 2.9e-46 188.7 137 65.7
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 3.8e-46 188.3 137 62.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-46 188.3 137 65.7
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.1e-45 186.8 137 64.2
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.5e-45 186.4 137 64.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.5e-45 186.4 128 65.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.9e-45 186.0 137 60.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.5e-45 185.7 137 61.3
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 2.5e-45 185.7 137 63.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.5e-45 185.7 137 62.8
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.5e-45 185.7 138 63.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 3.2e-45 185.3 137 65.7
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.2e-45 185.3 137 66.4
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 3.2e-45 185.3 137 62.8
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.5e-45 184.5 137 64.2
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 5.5e-45 184.5 137 65.7
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 7.2e-45 184.1 137 62.8
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 9.4e-45 183.7 137 61.3
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 9.4e-45 183.7 137 63.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 9.4e-45 183.7 137 64.2
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.6e-44 183.0 137 63.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 3.6e-44 181.8 137 62.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.7e-44 181.4 137 61.3
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 6.1e-44 181.0 137 62.0
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 6.1e-44 181.0 137 62.0
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 8.0e-44 180.6 137 62.8
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.4e-43 179.9 138 60.9
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-43 179.5 137 63.5
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.8e-43 179.5 137 62.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.3e-43 179.1 137 58.4
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 3.0e-43 178.7 137 61.3
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.0e-43 178.3 137 61.3
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 6.8e-43 177.6 138 58.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 6.8e-43 177.6 138 58.0
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 6.8e-43 177.6 137 59.9
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-42 176.8 135 61.5
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.2e-42 176.8 137 59.9
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.5e-42 176.4 137 62.8
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.6e-42 175.6 137 59.9
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.6e-42 175.6 137 61.3
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.4e-42 175.3 137 61.3
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 4.4e-42 174.9 137 60.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 4.4e-42 174.9 137 60.6
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 9.8e-42 173.7 138 58.7
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-41 173.3 138 58.7
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.7e-41 172.9 137 60.6
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.2e-41 172.6 137 58.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.2e-41 172.6 137 62.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.7e-41 171.8 137 61.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.8e-41 171.4 128 65.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.8e-41 171.4 137 57.7
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.1e-40 170.2 137 56.9
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.8e-40 169.5 137 59.1
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.1e-40 168.3 137 58.4
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 9.1e-40 167.2 137 62.0
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 4.5e-39 164.9 137 59.9
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 4.5e-39 164.9 137 59.1
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 4.5e-39 164.9 138 55.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.7e-38 162.9 137 59.9
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.8e-38 161.8 137 56.9
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.0e-38 161.4 137 54.0
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.1e-37 160.2 137 55.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.5e-37 159.8 135 54.8
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.0e-35 151.8 137 51.8
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 5.2e-35 151.4 137 52.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.0e-34 149.4 112 66.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.6e-34 149.1 112 64.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.4e-34 148.7 128 57.0
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-33 146.7 137 52.6
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-33 146.7 137 49.6
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.2e-33 146.0 137 51.8
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.7e-33 145.2 137 55.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.1e-32 143.7 134 53.0
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.4e-32 141.4 137 51.1
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 7.0e-32 141.0 131 53.4
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.7e-31 139.0 137 50.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 4.5e-31 138.3 137 46.7
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.8e-30 135.2 103 62.1
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.3e-29 132.1 123 50.4
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.3e-27 125.9 138 41.3
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.8e-27 124.4 115 53.9
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.6e-26 122.5 106 55.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.4e-26 122.1 137 48.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.4e-24 116.7 137 46.0
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.2e-24 115.5 137 45.3
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 4.1e-24 115.2 136 45.6
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 8.6e-22 107.5 137 43.1
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 2.6e-18 95.9 137 41.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.6e-12 76.6 64 59.4


User provided reference genes

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