Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 9.1e-99 363.6 189 100.0
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 5.4e-75 284.6 188 78.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.3e-73 280.0 189 75.7
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.3e-73 279.3 189 77.8
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 2.3e-73 279.3 189 75.7
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.9e-73 278.9 189 75.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.9e-73 278.9 189 76.2
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.1e-72 276.9 189 77.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 1.1e-72 276.9 193 74.1
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.5e-72 276.6 189 77.2
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 9.5e-72 273.9 189 74.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.7e-71 271.6 189 77.2
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 6.1e-71 271.2 171 80.7
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 6.1e-71 271.2 189 74.6
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 6.1e-71 271.2 191 75.9
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 6.1e-71 271.2 191 74.9
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 8.0e-71 270.8 189 75.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 8.0e-71 270.8 189 74.1
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.4e-70 270.0 185 76.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.4e-70 270.0 175 77.7
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.3e-70 269.2 189 73.5
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.3e-70 269.2 189 73.5
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 3.1e-70 268.9 197 70.1
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 4.0e-70 268.5 190 73.7
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 4.0e-70 268.5 189 73.5
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 4.0e-70 268.5 189 74.1
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.0e-70 268.5 186 73.1
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 5.2e-70 268.1 188 75.0
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 6.8e-70 267.7 190 72.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 8.9e-70 267.3 189 72.0
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.2e-69 266.9 188 75.5
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.0e-69 266.2 178 76.4
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.6e-69 265.8 185 75.7
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 4.4e-69 265.0 189 73.0
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 4.4e-69 265.0 187 73.3
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 7.5e-69 264.2 185 75.7
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.2e-68 262.7 188 72.3
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.9e-68 262.3 186 73.1
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 6.4e-68 261.2 188 73.9
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.1e-67 260.4 189 71.4
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.1e-67 258.5 189 70.4
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.1e-67 258.5 189 70.4
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.4e-67 258.1 189 72.0
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.2e-67 257.3 191 69.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.2e-66 256.9 192 70.3
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.2e-66 256.9 190 71.6
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.6e-66 256.5 157 82.2
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-66 255.4 191 69.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.5e-66 255.4 191 69.6
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.5e-66 255.4 188 72.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.5e-66 255.4 200 68.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 6.0e-66 254.6 188 71.8
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.8e-66 254.2 201 68.7
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.8e-66 254.2 201 68.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.0e-65 253.8 191 67.5
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-65 253.8 201 66.7
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 3.9e-65 251.9 190 70.5
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 3.9e-65 251.9 195 68.2
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 5.0e-65 251.5 156 79.5
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 5.0e-65 251.5 187 71.1
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.0e-65 251.5 200 67.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 5.0e-65 251.5 191 70.7
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 6.6e-65 251.1 173 73.4
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 8.6e-65 250.8 194 67.0
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 8.6e-65 250.8 191 71.2
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.5e-64 250.0 190 68.4
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 1.5e-64 250.0 187 68.4
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.9e-64 249.6 184 70.1
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.9e-64 249.6 187 69.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.5e-64 249.2 190 67.9
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.3e-64 248.8 190 71.1
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 3.3e-64 248.8 188 68.1
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.3e-64 248.8 190 69.5
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.3e-64 248.4 190 67.9
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.3e-64 248.4 176 74.4
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.6e-64 248.1 187 70.6
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.6e-64 248.1 187 70.6
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 5.6e-64 248.1 191 69.1
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 9.5e-64 247.3 187 69.0
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 9.5e-64 247.3 187 67.9
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 9.5e-64 247.3 162 75.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.2e-63 246.9 189 67.7
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 1.2e-63 246.9 187 67.9
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.2e-63 246.9 175 73.1
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 6.2e-63 244.6 190 68.4
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.4e-62 243.4 183 69.4
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.1e-62 242.3 188 67.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 3.1e-62 242.3 193 67.9
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 6.8e-62 241.1 200 65.0
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.5e-61 240.0 207 62.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.5e-61 240.0 196 66.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 2.6e-61 239.2 172 71.5
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 2.6e-61 239.2 189 65.1
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 5.8e-61 238.0 169 72.8
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 9.8e-61 237.3 184 67.9
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.3e-60 236.9 190 67.4
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.9e-60 235.7 160 73.1
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.9e-60 235.0 191 67.0
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 6.4e-60 234.6 188 65.4
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 8.3e-60 234.2 188 68.1
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.1e-59 233.8 151 77.5
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 4.1e-59 231.9 190 67.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.2e-58 230.3 176 68.8
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.6e-58 229.9 188 66.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.6e-58 229.9 192 65.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.7e-58 229.2 192 65.6
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 3.5e-58 228.8 185 64.9
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.6e-58 228.4 187 65.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 5.1e-57 224.9 158 70.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.1e-57 224.9 195 65.6
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.1e-56 223.8 159 68.6
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.1e-56 223.8 179 65.9
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.5e-56 222.6 165 71.5
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 7.3e-56 221.1 208 60.6
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 9.5e-56 220.7 195 62.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 9.5e-56 220.7 158 69.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.1e-55 219.5 168 67.3
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 3.1e-54 215.7 190 64.7
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 8.9e-54 214.2 190 59.5
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.0e-53 213.0 167 65.9
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.0e-53 213.0 168 68.5
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.3e-52 210.3 168 67.3
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.4e-51 206.8 185 63.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.4e-51 206.1 190 59.5
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 3.2e-51 205.7 256 49.6
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 7.1e-51 204.5 147 68.7
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 8.9e-46 187.6 169 62.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.0e-45 186.4 191 57.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.4e-45 185.3 191 56.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.9e-44 182.6 147 63.9
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 1.4e-43 180.3 148 65.5
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.3e-41 173.7 231 48.1
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.6e-41 171.4 131 70.2
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.9e-40 169.9 162 56.8
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.3e-40 169.1 109 71.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 9.6e-40 167.5 131 64.9
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-38 164.1 174 53.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.2e-37 160.6 104 73.1
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 2.6e-37 159.5 173 52.6
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 9.9e-37 157.5 163 49.7
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.4e-36 154.5 129 60.5
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.2e-34 150.6 156 48.7
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.7e-34 149.4 130 60.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-34 148.7 130 60.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-34 148.7 130 60.0
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-32 144.1 130 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 7.3e-32 141.4 144 49.3
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.8e-31 138.7 158 46.8
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.4e-30 137.1 180 42.2
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.8e-30 136.7 91 68.1
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.1e-30 136.0 82 75.6
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 7.6e-29 131.3 111 60.4
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 7.6e-29 131.3 124 55.6
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.1e-24 117.5 117 58.1
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.8e-23 112.8 186 39.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 2.1e-18 96.7 86 60.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 4.0e-14 82.4 58 65.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-11 74.3 79 57.0
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 7.4e-08 61.6 132 37.9
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.4e-08 61.6 103 43.7


User provided reference genes

Program Settings