Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.9e-135 484.2 240 100.0
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.4e-114 414.8 209 96.7
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.6e-95 353.2 206 80.6
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.9e-95 351.3 207 79.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.7e-94 349.7 206 79.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.3e-94 349.4 207 80.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 3.8e-94 348.6 207 80.2
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 3.8e-94 348.6 206 81.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 3.8e-94 348.6 206 81.1
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.1e-93 347.1 203 81.8
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.5e-93 346.7 207 80.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.5e-93 346.7 209 78.9
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.9e-93 346.3 206 78.6
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 9.5e-93 344.0 210 77.1
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 9.5e-93 344.0 209 78.9
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.8e-92 342.4 207 79.2
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.8e-91 339.7 209 77.0
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.8e-91 339.7 209 77.0
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.3e-91 339.3 203 79.3
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.0e-91 339.0 207 78.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 4.0e-91 338.6 206 76.7
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 4.0e-91 338.6 209 76.6
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.5e-90 336.7 206 78.6
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.5e-90 336.7 206 78.6
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 2.0e-90 336.3 204 79.9
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-90 335.9 209 78.0
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 3.4e-90 335.5 205 77.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 7.5e-90 334.3 205 78.5
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 9.8e-90 334.0 203 78.8
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.2e-89 332.8 203 77.8
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.9e-89 332.4 203 78.3
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.9e-89 332.4 206 76.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.9e-89 332.4 206 77.7
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 4.9e-89 331.6 206 76.7
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 4.9e-89 331.6 206 77.7
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 8.3e-89 330.9 220 74.1
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.8e-88 329.7 220 73.6
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.1e-88 328.6 206 76.2
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 5.4e-88 328.2 206 76.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 9.2e-88 327.4 206 75.7
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.2e-87 327.0 200 77.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 1.2e-87 327.0 206 75.2
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.6e-87 326.6 209 75.1
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-87 326.6 206 74.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 5.9e-87 324.7 206 74.3
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 1.0e-86 323.9 205 75.1
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.3e-86 323.6 204 75.0
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.7e-86 323.2 203 75.4
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 6.6e-86 321.2 214 74.8
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.5e-85 320.1 206 75.7
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.9e-85 319.7 207 75.4
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 2.5e-85 319.3 214 72.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 4.3e-85 318.5 201 73.6
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 9.5e-85 317.4 253 64.8
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 9.5e-85 317.4 202 74.8
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.2e-84 317.0 204 74.5
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-83 313.2 203 73.4
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.8e-83 313.2 203 73.4
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.8e-83 313.2 203 73.4
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.8e-83 313.2 222 69.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 5.2e-83 311.6 203 72.9
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.8e-83 311.2 201 74.1
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 6.8e-83 311.2 201 74.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 6.8e-83 311.2 203 72.9
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 6.8e-83 311.2 203 72.9
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-82 310.5 210 72.4
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.6e-82 309.3 205 72.7
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.6e-82 309.3 205 72.7
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 7.5e-82 307.8 216 70.8
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 9.8e-82 307.4 209 69.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 9.8e-82 307.4 205 71.7
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 3.7e-81 305.4 202 72.8
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.1e-80 303.9 207 70.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.4e-80 302.8 203 70.4
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.6e-79 300.1 227 67.0
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 2.0e-79 299.7 209 70.3
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.7e-79 299.3 201 71.1
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 3.5e-79 298.9 201 71.1
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 4.6e-79 298.5 209 67.9
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.6e-79 298.5 206 70.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 7.8e-79 297.7 207 67.6
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.3e-78 297.0 207 70.0
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.3e-78 297.0 207 69.6
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.0e-78 295.8 207 69.6
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.5e-77 292.7 203 69.0
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 5.6e-77 291.6 203 69.5
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.6e-76 290.0 206 69.4
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.2e-72 275.8 168 78.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.1e-69 267.3 202 63.9
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 7.3e-69 264.6 208 64.9
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 2.8e-68 262.7 140 88.6
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 6.8e-67 258.1 168 71.4
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 8.9e-67 257.7 158 76.6
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.7e-65 253.4 209 61.7
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 2.7e-63 246.1 203 62.1
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 4.6e-63 245.4 210 59.0
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.6e-60 235.7 173 68.8
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.7e-60 235.3 238 55.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.7e-60 235.3 238 55.5
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 9.9e-58 227.6 214 51.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.4e-56 223.8 206 56.3
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 7.1e-56 221.5 206 54.9
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 9.3e-56 221.1 111 95.5
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 4.6e-55 218.8 205 57.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 4.6e-55 218.8 121 83.5
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.3e-54 216.5 121 83.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.6e-52 210.3 206 54.9
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 2.0e-50 203.4 201 53.7
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.5e-50 202.2 166 64.5
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.7e-49 200.3 204 52.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 3.8e-49 199.1 210 54.8
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.6e-47 192.2 198 50.5
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.1e-45 187.6 169 56.8
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.8e-44 182.2 204 49.5
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 9.0e-43 177.9 211 46.9
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.4e-41 171.4 122 69.7
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 7.1e-40 168.3 227 44.5
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-37 158.3 155 54.2
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.1e-35 154.5 221 43.0
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-28 130.6 94 64.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.1e-27 126.3 76 77.6
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.3e-22 110.2 84 61.9
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 3.4e-18 96.3 83 59.0
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.5e-18 95.9 210 33.8
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.7e-12 76.3 39 84.6
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 3.7e-12 76.3 66 56.1
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.1e-11 74.7 67 53.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 4.5e-10 69.3 46 67.4
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 5.9e-10 68.9 43 72.1
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.8e-09 66.2 37 81.1
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.8e-09 66.2 37 81.1
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-08 64.7 53 60.4
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 7.2e-08 62.0 53 52.8
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 8.8e-06 55.1 33 75.8


User provided reference genes

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