Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04182 Eucalyptus grandis HOM05D002549 ORTHO05D002755 1.0e-60 236.5 118 100.0
TAR625G1243 Trochodendron aralioides HOM05D002549 ORTHO05D002755 6.2e-21 104.4 113 53.1
Haze_25611 Corylus avellana HOM05D002549 ORTHO05D002755 3.0e-15 85.5 118 44.1
TAR383G0202 Trochodendron aralioides HOM05D002549 ORTHO05D002755 1.5e-14 83.2 117 44.4
Cfa003350 Carpinus fangiana HOM05D002549 ORTHO05D002755 3.3e-14 82.0 119 41.2
CiPaw.03G242300 Carya illinoinensis HOM05D002549 ORTHO05D002755 9.6e-14 80.5 115 43.5
MBI01_g37816_MAGBIO Magnolia biondii HOM05D002549 ORTHO05D002755 1.3e-13 80.1 109 49.5
Actinidia07432 Actinidia chinensis HOM05D002549 ORTHO05D002755 6.2e-13 77.8 114 44.7
PSO170G1992 Papaver somniferum HOM05D002549 ORTHO05D002755 1.8e-12 76.3 117 42.7
Eucgr.C01136 Eucalyptus grandis HOM05D002549 ORTHO05D002755 2.4e-12 75.9 115 47.0
Actinidia26401 Actinidia chinensis HOM05D002549 ORTHO05D002755 3.1e-12 75.5 114 46.5
Lalb_Chr07g0178831 Lupinus albus HOM05D002549 ORTHO05D002755 3.1e-12 75.5 103 44.7
Peaxi162Scf00274g00827 Petunia axillaris HOM05D002549 ORTHO05D002755 3.1e-12 75.5 111 43.2
Sed0003846 Sechium edule HOM05D002549 ORTHO05D002755 3.1e-12 75.5 108 45.4
Gorai.009G018700 Gossypium raimondii HOM05D002549 ORTHO05D002755 4.0e-12 75.1 104 45.2
Duzib168G1278 Durio zibethinus HOM05D002549 ORTHO05D002755 5.3e-12 74.7 104 45.2
PSO455G0279 Papaver somniferum HOM05D002549 ORTHO05D002755 6.9e-12 74.3 119 42.0
Duzib187G0701 Durio zibethinus HOM05D002549 ORTHO05D002755 9.0e-12 73.9 106 45.3
Gohir.A05G017400 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.5e-11 73.2 104 44.2
Gohir.D05G018300 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.5e-11 73.2 104 44.2
Manes.04G115900 Manihot esculenta HOM05D002549 ORTHO05D002755 2.6e-11 72.4 115 47.8
Nn8g39394 Nelumbo nucifera HOM05D002549 ORTHO05D002755 3.4e-11 72.0 117 42.7
Sed0007083 Sechium edule HOM05D002549 ORTHO05D002755 4.5e-11 71.6 116 39.7
Aqoxy7G02107 Aquilegia oxysepala HOM05D002549 ORTHO05D002755 5.8e-11 71.2 108 43.5
Nn2g11971 Nelumbo nucifera HOM05D002549 ORTHO05D002755 5.8e-11 71.2 113 43.4
PGR102G1153 Punica granatum HOM05D002549 ORTHO05D002755 9.9e-11 70.5 117 41.0
QL02p087849 Quercus lobata HOM05D002549 ORTHO05D002755 9.9e-11 70.5 120 40.0
Dinv30577 Davidia involucrata HOM05D002549 ORTHO05D002755 1.7e-10 69.7 112 42.0
Gohir.A06G057200 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.7e-10 69.7 106 42.5
Manes.11G053601 Manihot esculenta HOM05D002549 ORTHO05D002755 1.7e-10 69.7 116 44.0
TAR626G1731 Trochodendron aralioides HOM05D002549 ORTHO05D002755 1.7e-10 69.7 114 41.2
Glyma.17G116100 Glycine max HOM05D002549 ORTHO05D002755 2.2e-10 69.3 117 40.2
Manes.14G130728 Manihot esculenta HOM05D002549 ORTHO05D002755 2.9e-10 68.9 106 44.3
Medtr4g114050 Medicago truncatula HOM05D002549 ORTHO05D002755 2.9e-10 68.9 111 39.6
Ah.14g080260 Amaranthus hybridus HOM05D002549 ORTHO05D002755 3.8e-10 68.6 108 47.2
CsaV3_1G029830 Cucumis sativus L. HOM05D002549 ORTHO05D002755 3.8e-10 68.6 112 41.1
Peaxi162Scf00984g00014 Petunia axillaris HOM05D002549 ORTHO05D002755 3.8e-10 68.6 110 39.1
QL05p027977 Quercus lobata HOM05D002549 ORTHO05D002755 4.9e-10 68.2 115 39.1
CAN.G407.104 Capsicum annuum HOM05D002549 ORTHO05D002755 6.4e-10 67.8 114 43.0
Ciclev10010562m.g Citrus clementina HOM05D002549 ORTHO05D002755 6.4e-10 67.8 100 44.0
CSS0019510 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 8.4e-10 67.4 120 41.7
CSS0040923 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 8.4e-10 67.4 120 41.7
Gohir.D06G055500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 8.4e-10 67.4 106 41.5
Gorai.010G064800 Gossypium raimondii HOM05D002549 ORTHO05D002755 8.4e-10 67.4 106 41.5
Gohir.A07G034900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.1e-09 67.0 114 40.4
MSTRG.22728 Avicennia marina HOM05D002549 ORTHO05D002755 1.4e-09 66.6 107 42.1
Sc18g0000680 Simmondsia chinensis HOM05D002549 ORTHO05D002755 1.4e-09 66.6 107 42.1
Aqoxy7G03731 Aquilegia oxysepala HOM05D002549 ORTHO05D002755 1.9e-09 66.2 106 41.5
CSS0001526 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.9e-09 66.2 110 40.0
CSS0031007 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.9e-09 66.2 110 40.0
COL.COLO4_05774 Corchorus olitorius HOM05D002549 ORTHO05D002755 1.9e-09 66.2 108 44.4
PGR142G0090 Punica granatum HOM05D002549 ORTHO05D002755 1.9e-09 66.2 119 40.3
ClCG06G010950 Citrullus lanatus HOM05D002549 ORTHO05D002755 2.4e-09 65.9 116 42.2
MELO3C026647.2 Cucumis melo HOM05D002549 ORTHO05D002755 2.4e-09 65.9 113 42.5
Nitab4.5_0002257g0060 Nicotiana tabacum HOM05D002549 ORTHO05D002755 2.4e-09 65.9 119 38.7
Peaxi162Scf00641g00003 Petunia axillaris HOM05D002549 ORTHO05D002755 2.4e-09 65.9 110 40.0
Solyc03g116490.1 Solanum lycopersicum HOM05D002549 ORTHO05D002755 2.4e-09 65.9 114 41.2
Gohir.D07G038900 Gossypium hirsutum HOM05D002549 ORTHO05D002755 3.2e-09 65.5 104 42.3
Gorai.001G041000 Gossypium raimondii HOM05D002549 ORTHO05D002755 3.2e-09 65.5 104 42.3
vmacro18969 Vaccinium macrocarpon HOM05D002549 ORTHO05D002755 3.2e-09 65.5 141 36.9
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 3.2e-09 65.5 102 40.2
CANSAT11G2695 Cannabis sativa HOM05D002549 ORTHO05D002755 5.5e-09 64.7 110 39.1
CAN.G377.7 Capsicum annuum HOM05D002549 ORTHO05D002755 5.5e-09 64.7 114 43.0
Prupe.7G240000 Prunus persica HOM05D002549 ORTHO05D002755 5.5e-09 64.7 104 37.5
Hma1.2p1_0018F.1_g012630 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 7.1e-09 64.3 118 38.1
Os01g0174100 Oryza sativa ssp. japonica HOM05D002549 ORTHO05D002755 7.1e-09 64.3 112 42.9
Sopen03g035380 Solanum pennellii HOM05D002549 ORTHO05D002755 7.1e-09 64.3 110 40.0
AUR62011092 Chenopodium quinoa HOM05D002549 ORTHO05D002755 9.3e-09 63.9 116 39.7
Potri.003G062200 Populus trichocarpa HOM05D002549 ORTHO05D002755 9.3e-09 63.9 116 35.3
ClCG07G012770 Citrullus lanatus HOM05D002549 ORTHO05D002755 1.2e-08 63.5 111 41.4
Dinv41529 Davidia involucrata HOM05D002549 ORTHO05D002755 1.2e-08 63.5 108 38.0
PGSC0003DMG400000607 Solanum tuberosum HOM05D002549 ORTHO05D002755 1.2e-08 63.5 114 39.5
HPP92_021545 Vanilla planifolia HOM05D002549 ORTHO05D002755 1.2e-08 63.5 116 42.2
Zm00001eb294500 Zea mays HOM05D002549 ORTHO05D002755 1.2e-08 63.5 105 42.9
CSS0010325 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.6e-08 63.2 108 44.4
CSS0036416 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 1.6e-08 63.2 108 44.4
Dinv38101 Davidia involucrata HOM05D002549 ORTHO05D002755 1.6e-08 63.2 117 38.5
Hma1.2p1_0665F.1_g199110 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 1.6e-08 63.2 117 35.9
Phvul.003G163200 Phaseolus vulgaris HOM05D002549 ORTHO05D002755 1.6e-08 63.2 117 35.9
HPP92_021485 Vanilla planifolia HOM05D002549 ORTHO05D002755 1.6e-08 63.2 117 42.7
Nitab4.5_0004056g0010 Nicotiana tabacum HOM05D002549 ORTHO05D002755 2.1e-08 62.8 110 40.0
THA.LOC104812501 Tarenaya hassleriana HOM05D002549 ORTHO05D002755 2.7e-08 62.4 135 35.6
DCAR_009199 Daucus carota HOM05D002549 ORTHO05D002755 3.5e-08 62.0 115 38.3
Potri.001G172100 Populus trichocarpa HOM05D002549 ORTHO05D002755 4.6e-08 61.6 117 37.6
Sabra01G0139600 Salix brachista HOM05D002549 ORTHO05D002755 4.6e-08 61.6 112 37.5
Sopen12g002570 Solanum pennellii HOM05D002549 ORTHO05D002755 4.6e-08 61.6 105 40.0
PGSC0003DMG400020666 Solanum tuberosum HOM05D002549 ORTHO05D002755 4.6e-08 61.6 113 38.9
Thecc.06G070600 Theobroma cacao HOM05D002549 ORTHO05D002755 4.6e-08 61.6 127 37.0
Ciclev10009953m.g Citrus clementina HOM05D002549 ORTHO05D002755 6.0e-08 61.2 111 39.6
Glyma.13G168400 Glycine max HOM05D002549 ORTHO05D002755 6.0e-08 61.2 117 35.9
SGA_v2.0_scaffold5G02666 Striga asiatica HOM05D002549 ORTHO05D002755 6.0e-08 61.2 112 38.4
EL10Ac8g18620 Beta vulgaris HOM05D002549 ORTHO05D002755 7.9e-08 60.8 106 40.6
Hma1.2p1_0515F.1_g170200 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 7.9e-08 60.8 110 39.1
RcHm_v2.0_Chr2g0136461 Rosa chinensis HOM05D002549 ORTHO05D002755 7.9e-08 60.8 109 38.5
arahy.Tifrunner.gnm1.ann1.62RLPM Arachis hypogaea HOM05D002549 ORTHO05D002755 1.0e-07 60.5 103 40.8
Gohir.A05G125500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.0e-07 60.5 121 37.2
Oeu063538.1 Olea europaea HOM05D002549 ORTHO05D002755 1.0e-07 60.5 108 40.7
TPR.G8449 Trifolium pratense HOM05D002549 ORTHO05D002755 1.0e-07 60.5 108 38.0
MSTRG.11120 Avicennia marina HOM05D002549 ORTHO05D002755 1.3e-07 60.1 112 38.4
Gohir.D05G126500 Gossypium hirsutum HOM05D002549 ORTHO05D002755 1.8e-07 59.7 121 38.0
Gorai.009G130500 Gossypium raimondii HOM05D002549 ORTHO05D002755 1.8e-07 59.7 123 36.6
Lj3g0000921 Lotus japonicus HOM05D002549 ORTHO05D002755 1.8e-07 59.7 107 40.2
Psat5g301360 Pisum sativum HOM05D002549 ORTHO05D002755 1.8e-07 59.7 109 36.7
Thecc.09G123500 Theobroma cacao HOM05D002549 ORTHO05D002755 1.8e-07 59.7 107 37.4
Actinidia08809 Actinidia chinensis HOM05D002549 ORTHO05D002755 2.3e-07 59.3 109 38.5
BcaC03g15995 Brassica carinata HOM05D002549 ORTHO05D002755 2.3e-07 59.3 117 41.0
C02p37500 Brassica napus HOM05D002549 ORTHO05D002755 2.3e-07 59.3 117 41.0
CiPaw.01G245100 Carya illinoinensis HOM05D002549 ORTHO05D002755 2.3e-07 59.3 113 36.3
Hma1.2p1_0007F.1_g005060 Hydrangea macrophylla HOM05D002549 ORTHO05D002755 2.3e-07 59.3 111 39.6
PGR031G0796 Punica granatum HOM05D002549 ORTHO05D002755 2.3e-07 59.3 116 38.8
Rhsim12G0192900 Rhododendron simsii HOM05D002549 ORTHO05D002755 2.3e-07 59.3 108 38.9
HPP92_021533 Vanilla planifolia HOM05D002549 ORTHO05D002755 2.3e-07 59.3 117 41.0
arahy.Tifrunner.gnm1.ann1.CZ6M1X Arachis hypogaea HOM05D002549 ORTHO05D002755 3.0e-07 58.9 103 39.8
BolC2t09762H Brassica oleracea HOM05D002549 ORTHO05D002755 3.0e-07 58.9 117 41.0
CSS0006659 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 3.0e-07 58.9 104 42.3
Cc04_g04130 Coffea canephora HOM05D002549 ORTHO05D002755 3.0e-07 58.9 139 36.7
Duzib150G0928 Durio zibethinus HOM05D002549 ORTHO05D002755 3.0e-07 58.9 108 43.5
Glyma.07G031900 Glycine max HOM05D002549 ORTHO05D002755 3.0e-07 58.9 106 41.5
TPR.G10706 Trifolium pratense HOM05D002549 ORTHO05D002755 3.0e-07 58.9 117 34.2
MD02G1035000 Malus domestica HOM05D002549 ORTHO05D002755 3.9e-07 58.5 109 36.7
VMungo1215G2005 Vigna mungo HOM05D002549 ORTHO05D002755 3.9e-07 58.5 117 33.3
A02p23750 Brassica napus HOM05D002549 ORTHO05D002755 5.1e-07 58.2 117 41.0
BraA02t07367Z Brassica rapa HOM05D002549 ORTHO05D002755 5.1e-07 58.2 117 41.0
CsaV3_7G032570 Cucumis sativus L. HOM05D002549 ORTHO05D002755 5.1e-07 58.2 108 38.9
Sed0016403 Sechium edule HOM05D002549 ORTHO05D002755 5.1e-07 58.2 117 36.8
Zm00001eb122730 Zea mays HOM05D002549 ORTHO05D002755 5.1e-07 58.2 110 35.5
ATR1156G028 Amborella trichopoda HOM05D002549 ORTHO05D002755 6.7e-07 57.8 112 37.5
CARHR015940 Cardamine hirsuta HOM05D002549 ORTHO05D002755 6.7e-07 57.8 125 38.4
Cc06_g08750 Coffea canephora HOM05D002549 ORTHO05D002755 6.7e-07 57.8 126 41.3
Migut.I00796 Erythranthe guttata HOM05D002549 ORTHO05D002755 6.7e-07 57.8 110 40.9
Psat7g255840 Pisum sativum HOM05D002549 ORTHO05D002755 6.7e-07 57.8 123 35.8
Sed0002433 Sechium edule HOM05D002549 ORTHO05D002755 6.7e-07 57.8 106 39.6
SGA_v2.0_scaffold37G14785 Striga asiatica HOM05D002549 ORTHO05D002755 6.7e-07 57.8 112 39.3
Lalb_Chr25g0279471 Lupinus albus HOM05D002549 ORTHO05D002755 8.7e-07 57.4 107 38.3
Medtr4g011060 Medicago truncatula HOM05D002549 ORTHO05D002755 8.7e-07 57.4 117 37.6
HPP92_021537 Vanilla planifolia HOM05D002549 ORTHO05D002755 8.7e-07 57.4 71 53.5
Ah.09g225880 Amaranthus hybridus HOM05D002549 ORTHO05D002755 1.1e-06 57.0 110 40.0
AL2G41330 Arabidopsis lyrata HOM05D002549 ORTHO05D002755 1.1e-06 57.0 128 35.2
ClCG09G002760 Citrullus lanatus HOM05D002549 ORTHO05D002755 1.1e-06 57.0 109 36.7
Lalb_Chr13g0301951 Lupinus albus HOM05D002549 ORTHO05D002755 1.1e-06 57.0 103 38.8
PGR102G2540 Punica granatum HOM05D002549 ORTHO05D002755 1.1e-06 57.0 124 38.7
CiPaw.02G155200 Carya illinoinensis HOM05D002549 ORTHO05D002755 1.5e-06 56.6 114 37.7
Glyma.08G210800 Glycine max HOM05D002549 ORTHO05D002755 1.5e-06 56.6 107 41.1
Atru.chr7.2390 Acer truncatum HOM05D002549 ORTHO05D002755 1.9e-06 56.2 101 40.6
RcHm_v2.0_Chr2g0089091 Rosa chinensis HOM05D002549 ORTHO05D002755 1.9e-06 56.2 114 36.0
Atru.chr7.1209 Acer truncatum HOM05D002549 ORTHO05D002755 2.5e-06 55.8 106 40.6
Glyma.13G364000 Glycine max HOM05D002549 ORTHO05D002755 2.5e-06 55.8 108 42.6
Oeu063796.1 Olea europaea HOM05D002549 ORTHO05D002755 2.5e-06 55.8 111 35.1
Zm00001eb385630 Zea mays HOM05D002549 ORTHO05D002755 2.5e-06 55.8 120 33.3
AT1G15400 Arabidopsis thaliana HOM05D002549 ORTHO05D002755 3.3e-06 55.5 121 37.2
MELO3C023405.2 Cucumis melo HOM05D002549 ORTHO05D002755 3.3e-06 55.5 106 36.8
Actinidia15996 Actinidia chinensis HOM05D002549 ORTHO05D002755 4.3e-06 55.1 102 38.2
Haze_16521 Corylus avellana HOM05D002549 ORTHO05D002755 4.3e-06 55.1 117 36.8
FAN26G2275 Fragaria x ananassa HOM05D002549 ORTHO05D002755 4.3e-06 55.1 117 32.5
Oeu033467.1 Olea europaea HOM05D002549 ORTHO05D002755 4.3e-06 55.1 109 38.5
Aa31LG7G160 Aethionema arabicum HOM05D002549 ORTHO05D002755 5.6e-06 54.7 121 37.2
AT1G80180 Arabidopsis thaliana HOM05D002549 ORTHO05D002755 5.6e-06 54.7 129 38.0
COL.COLO4_12915 Corchorus olitorius HOM05D002549 ORTHO05D002755 5.6e-06 54.7 125 34.4
Prupe.3G081500 Prunus persica HOM05D002549 ORTHO05D002755 5.6e-06 54.7 120 35.8
Zm00001eb276830 Zea mays HOM05D002549 ORTHO05D002755 7.4e-06 54.3 120 34.2
Aa31LG4G480 Aethionema arabicum HOM05D002549 ORTHO05D002755 9.6e-06 53.9 106 37.7
BcaB01g04804 Brassica carinata HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
BcaB01g04807 Brassica carinata HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
A03p09820 Brassica napus HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
C03p11400 Brassica napus HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
BolC3t13614H Brassica oleracea HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
BraA03t10297Z Brassica rapa HOM05D002549 ORTHO05D002755 9.6e-06 53.9 104 39.4
CSS0021729 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 9.6e-06 53.9 118 37.3
CSS0043623 Camellia sinensis var. sinensis HOM05D002549 ORTHO05D002755 9.6e-06 53.9 118 37.3
Medtr2g103380 Medicago truncatula HOM05D002549 ORTHO05D002755 9.6e-06 53.9 108 38.0


User provided reference genes

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