Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 2.6e-155 553.1 600 100.0
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 2.5e-150 536.6 600 88.3
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 9.4e-57 225.7 268 47.4
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 1.2e-56 225.3 258 49.2
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 2.7e-56 224.2 265 46.0
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 3.0e-55 220.7 258 46.5
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 8.8e-55 219.2 262 48.1
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 1.1e-54 218.8 274 47.4
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 5.7e-54 216.5 273 48.0
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 2.2e-53 214.5 266 48.1
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 1.1e-52 212.2 268 45.5
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 1.8e-52 211.5 265 46.4
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 3.1e-52 210.7 273 46.2
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 9.1e-52 209.1 212 49.1
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-51 208.8 242 45.5
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 1.2e-51 208.8 242 45.5
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 1.2e-51 208.8 273 45.4
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 2.0e-51 208.0 267 45.7
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 3.5e-51 207.2 202 50.0
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 3.5e-51 207.2 268 45.5
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 1.0e-50 205.7 245 45.3
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 2.9e-50 204.1 211 49.3
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 6.5e-50 203.0 211 49.3
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 1.5e-49 201.8 225 47.1
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 7.2e-49 199.5 277 41.9
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 4.7e-48 196.8 249 45.8
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 4.7e-48 196.8 235 43.0
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 8.0e-48 196.1 257 44.7
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.4e-47 195.3 211 48.3
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 1.4e-47 195.3 242 45.5
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 2.3e-47 194.5 239 44.8
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 3.0e-47 194.1 239 44.4
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 5.2e-47 193.4 214 46.7
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 2.0e-46 191.4 261 42.5
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 2.0e-46 191.4 207 50.2
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 2.0e-46 191.4 276 43.5
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 5.7e-46 189.9 256 43.0
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 9.8e-46 189.1 194 49.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.2e-45 188.0 221 43.4
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 2.8e-45 187.6 249 41.4
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 3.7e-45 187.2 258 41.1
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 6.3e-45 186.4 207 45.4
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 8.3e-45 186.0 249 40.6
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 2.4e-44 184.5 212 46.7
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 7.0e-44 183.0 232 44.0
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 9.1e-44 182.6 231 45.5
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 3.5e-43 180.6 240 41.7
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 7.7e-43 179.5 240 40.8
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.7e-42 178.3 209 45.5
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 6.5e-42 176.4 249 40.2
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 6.5e-42 176.4 239 43.9
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 8.5e-42 176.0 264 41.3
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 1.5e-41 175.3 248 42.3
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 1.5e-41 175.3 247 41.7
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 2.5e-41 174.5 264 41.3
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 4.2e-41 173.7 214 43.0
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 5.5e-41 173.3 214 45.3
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 9.4e-41 172.6 261 42.5
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 9.4e-41 172.6 234 41.0
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 3.6e-40 170.6 232 42.2
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 8.0e-40 169.5 226 43.8
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.4e-39 168.7 204 45.6
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 6.8e-39 166.4 207 41.1
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 8.8e-39 166.0 200 45.5
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 8.8e-39 166.0 238 42.4
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 2.6e-38 164.5 217 44.7
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 4.4e-38 163.7 260 40.8
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 4.4e-38 163.7 223 43.0
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 1.7e-37 161.8 254 40.9
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 6.3e-37 159.8 255 40.0
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 2.0e-35 154.8 258 38.8
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 2.0e-35 154.8 188 47.9
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 3.5e-35 154.1 236 40.7
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 3.5e-35 154.1 211 40.8
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 4.5e-35 153.7 236 40.7
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 4.5e-35 153.7 249 39.8
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 1.7e-34 151.8 213 37.6
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 2.3e-34 151.4 232 39.2
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.1e-33 149.1 258 38.4
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 1.5e-33 148.7 224 39.7
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 5.2e-31 140.2 158 47.5
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 3.7e-29 134.0 204 39.7
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 8.3e-29 132.9 207 36.2
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 4.6e-27 127.1 153 39.2
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 1.3e-26 125.6 153 41.2
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 5.8e-22 110.2 204 35.3
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 1.3e-21 109.0 136 47.1
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 3.5e-19 100.9 163 36.8
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.0e-18 97.1 136 41.9
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 5.0e-18 97.1 175 36.0
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.6e-16 90.9 149 38.9
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 5.2e-15 87.0 97 47.4
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 5.2e-15 87.0 97 47.4
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.9e-13 81.3 165 37.0
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 7.1e-12 76.6 169 33.1
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 1.2e-11 75.9 116 39.7
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 1.2e-11 75.9 127 35.4
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 1.0e-10 72.8 224 25.4
CSS0037045 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.3e-10 71.6 61 55.7
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 2.3e-10 71.6 219 25.6
RcHm_v2.0_Chr4g0419111 Rosa chinensis HOM05D007340 ORTHO05D008979 5.1e-10 70.5 63 52.4
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 6.6e-10 70.1 202 24.3
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 1.5e-09 68.9 207 25.1
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 7.3e-09 66.6 212 22.6
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 9.5e-09 66.2 66 47.0
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 1.6e-08 65.5 226 24.8
CSS0022359 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.8e-08 64.7 60 53.3
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 8.1e-08 63.2 214 24.3
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 1.4e-07 62.4 218 22.0
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.8e-07 60.1 179 26.3
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 8.9e-07 59.7 216 21.8
Sc25g0002730 Simmondsia chinensis HOM05D006819 ORTHO05D008763 2.0e-06 58.5 160 26.2
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 3.4e-06 57.8 225 21.3
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 4.4e-06 57.4 219 21.5


User provided reference genes

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