Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04065 Eucalyptus grandis HOM05D004574 ORTHO05D005612 5.8e-277 957.2 542 100.0
Eucgr.L01317 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.5e-155 553.9 448 79.0
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 1.1e-123 448.0 542 53.5
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 4.7e-117 426.0 362 72.7
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 9.7e-115 418.3 539 50.1
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 1.3e-114 417.9 531 48.8
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 2.0e-112 410.6 526 50.4
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 9.4e-110 401.7 542 48.5
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 6.1e-109 399.1 533 49.3
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 8.0e-109 398.7 543 47.9
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 8.8e-108 395.2 539 49.0
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 7.4e-107 392.1 538 51.7
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 8.2e-106 388.7 530 49.6
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 3.1e-105 386.7 510 47.5
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 4.1e-105 386.3 551 48.3
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 1.2e-104 384.8 529 46.3
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 1.2e-104 384.8 535 46.2
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 1.6e-104 384.4 528 45.5
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 2.0e-104 384.0 534 46.3
Dinv42911 Davidia involucrata HOM05D004574 ORTHO05D005612 2.0e-104 384.0 500 51.4
Dinv43190 Davidia involucrata HOM05D004574 ORTHO05D005612 2.0e-104 384.0 500 51.4
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 2.6e-104 383.6 530 48.1
CSS0049430 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 4.2e-102 376.3 522 49.0
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 5.5e-102 375.9 528 51.1
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 1.2e-101 374.8 534 45.9
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 5.2e-100 369.4 530 44.7
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 8.8e-100 368.6 541 45.5
FAN26G2227 Fragaria x ananassa HOM05D004574 ORTHO05D005612 3.3e-99 366.7 534 45.3
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 5.7e-99 365.9 550 45.1
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 1.3e-98 364.8 509 48.3
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 2.8e-98 363.6 547 44.6
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 3.1e-97 360.1 524 49.6
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 6.5e-95 352.4 575 42.4
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 3.2e-94 350.1 543 47.9
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 9.4e-94 348.6 526 48.3
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 1.2e-93 348.2 552 42.8
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 2.7e-93 347.1 533 44.7
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 2.7e-93 347.1 551 46.1
GSVIVG01012900001 Vitis vinifera HOM05D004574 ORTHO05D005612 2.0e-91 340.9 507 45.4
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 1.3e-90 338.2 532 47.2
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 1.3e-90 338.2 527 44.4
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 2.2e-90 337.4 551 43.4
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 2.8e-90 337.0 543 41.6
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.8e-90 337.0 564 43.1
Thhalv10020109m.g Eutrema salsugineum HOM05D004574 ORTHO05D005612 1.1e-89 335.1 537 45.8
TPR.G15786 Trifolium pratense HOM05D004574 ORTHO05D005612 2.4e-89 334.0 529 45.6
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 3.1e-89 333.6 520 46.0
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 1.2e-88 331.6 532 44.2
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.6e-88 331.3 552 43.1
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 2.0e-88 330.9 543 40.0
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 2.7e-88 330.5 548 44.2
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 2.7e-88 330.5 533 46.5
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 4.5e-88 329.7 530 46.0
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 5.9e-88 329.3 569 44.8
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 1.7e-87 327.8 548 42.0
Sed0022583 Sechium edule HOM05D004574 ORTHO05D005612 3.8e-87 326.6 558 40.7
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 5.0e-87 326.2 516 43.6
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 8.6e-87 325.5 544 42.8
Carub.0003s0894 Capsella rubella HOM05D004574 ORTHO05D005612 4.2e-86 323.2 510 48.0
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 5.5e-86 322.8 529 41.8
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 5.5e-86 322.8 612 37.4
AT3G09850 Arabidopsis thaliana HOM05D004574 ORTHO05D005612 2.1e-85 320.9 531 43.7
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 3.6e-85 320.1 538 40.7
Aa31LG3G2320 Aethionema arabicum HOM05D004574 ORTHO05D005612 4.7e-85 319.7 543 46.2
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 1.5e-83 314.7 525 41.7
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 1.5e-83 314.7 525 42.5
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 5.7e-83 312.8 550 42.9
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 4.9e-82 309.7 568 43.7
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 1.4e-81 308.1 521 46.1
Sp3g08180 Schrenkiella parvula HOM05D004574 ORTHO05D005612 4.1e-81 306.6 534 44.9
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 7.0e-81 305.8 552 45.5
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 9.2e-81 305.4 535 45.0
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 1.7e-79 301.2 541 41.8
AUR62011249 Chenopodium quinoa HOM05D004574 ORTHO05D005612 5.0e-79 299.7 560 45.4
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 5.0e-79 299.7 559 42.8
Hma1.2p1_0182F.1_g080580 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 6.6e-79 299.3 450 50.0
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 1.5e-78 298.1 458 44.1
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 1.5e-78 298.1 522 47.1
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 9.5e-78 295.4 591 39.9
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 1.6e-77 294.7 437 47.8
Ca_21611_v3 Cicer arietinum L. HOM05D004574 ORTHO05D005612 8.0e-77 292.4 536 39.9
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 3.4e-75 287.0 522 45.6
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 4.4e-75 286.6 589 43.0
A05p39200 Brassica napus HOM05D004574 ORTHO05D005612 4.4e-75 286.6 533 42.4
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 4.4e-75 286.6 438 43.4
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 1.3e-74 285.0 537 42.1
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 1.3e-74 285.0 537 42.1
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 1.7e-74 284.6 556 39.7
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 2.9e-74 283.9 420 51.4
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 3.7e-74 283.5 542 40.0
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 1.9e-73 281.2 557 43.1
BraA05t22709Z Brassica rapa HOM05D004574 ORTHO05D005612 9.2e-73 278.9 533 41.7
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 3.5e-72 276.9 538 42.0
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 8.6e-71 272.3 538 41.1
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 8.6e-71 272.3 547 45.7
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 3.6e-69 266.9 525 42.3
PSO170G6219 Papaver somniferum HOM05D004574 ORTHO05D005612 8.0e-69 265.8 556 38.8
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.3e-68 264.2 525 37.9
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.2e-67 261.9 531 37.3
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 9.8e-67 258.8 547 39.5
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.7e-66 258.1 520 42.9
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 4.7e-61 240.0 545 36.7
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 6.2e-61 239.6 420 46.0
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 2.3e-60 237.7 428 43.5
COL.COLO4_24086 Corchorus olitorius HOM05D004574 ORTHO05D005612 3.5e-56 223.8 370 45.1
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 4.6e-56 223.4 393 40.2
CSS0003558 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 7.8e-56 222.6 402 43.3
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 1.0e-55 222.2 496 41.3
TAR625G0795 Trochodendron aralioides HOM05D004574 ORTHO05D005612 4.6e-48 196.8 379 39.1
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 6.6e-47 193.0 612 34.5
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 4.9e-42 176.8 624 29.6
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 1.1e-41 175.6 427 34.9
unitig_0.g517 Utricularia gibba HOM05D004574 ORTHO05D005612 1.0e-39 169.1 391 39.4
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 5.1e-39 166.8 522 30.8
TAR625G1332 Trochodendron aralioides HOM05D004574 ORTHO05D005612 2.5e-38 164.5 130 66.2
Os08g0288500 Oryza sativa ssp. japonica HOM05D004574 ORTHO05D005612 3.3e-38 164.1 305 48.9
Hma1.2p1_2402F.1_g321400 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 5.6e-38 163.3 341 34.3
Eucgr.L02096 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.1e-36 159.1 81 97.5
SHI03239 Sapria himalayana HOM05D004574 ORTHO05D005612 2.4e-36 157.9 379 32.5
Hma1.2p1_1784F.1_g302190 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 2.0e-27 128.3 102 63.7
SEGI_00197 Sequoiadendron giganteum HOM05D000238 ORTHO05D001889 1.2e-24 119.0 431 28.3
Eucgr.C04073 Eucalyptus grandis HOM05D004574 ORTHO05D005612 6.7e-23 113.2 58 96.6
Eucgr.L03201 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.6e-21 108.6 81 74.1
COL.COLO4_24085 Corchorus olitorius HOM05D004574 ORTHO05D005612 8.2e-21 106.3 132 50.0
Mapoly0074s0045 Marchantia polymorpha HOM05D004574 ORTHO05D005612 1.8e-20 105.1 144 43.8
Pp3c15_19210 Physcomitrium patens HOM05D004574 ORTHO05D005612 4.5e-19 100.5 640 24.5
Pp3c15_19211 Physcomitrium patens HOM05D004574 ORTHO05D005612 4.5e-19 100.5 640 24.5
Phvul.003G175200 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 3.8e-18 97.4 231 38.1
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 7.1e-17 93.2 47 95.7
AagrBONN_evm.TU.Sc2ySwM_340.493 Anthoceros agrestis HOM05D004574 ORTHO05D005612 1.7e-10 72.0 127 33.9
BolC1t05428H Brassica oleracea HOM05D004574 ORTHO05D005612 6.1e-08 63.5 131 35.1
SHI03242 Sapria himalayana HOM05D004574 ORTHO05D005612 3.0e-07 61.2 53 58.5
Cre09.g388986 Chlamydomonas reinhardtii HOM05D004574 ORTHO05D005612 2.5e-06 58.2 111 33.3
Actinidia38356 Actinidia chinensis HOM05D004574 ORTHO05D005612 9.7e-06 56.2 92 44.6


User provided reference genes

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