Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 5.1e-99 364.4 181 100.0
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.2e-84 316.6 190 87.9
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 7.0e-48 194.5 128 75.8
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.2e-47 193.7 103 87.4
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.2e-47 193.7 103 88.3
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.6e-47 193.4 103 87.4
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.0e-47 193.0 101 89.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 3.5e-47 192.2 103 85.4
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 3.5e-47 192.2 103 86.4
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 3.5e-47 192.2 101 88.1
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 5.9e-47 191.4 103 87.4
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 7.7e-47 191.0 101 88.1
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 1.0e-46 190.7 103 86.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 2.9e-46 189.1 103 85.4
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 3.8e-46 188.7 103 84.5
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 5.0e-46 188.3 100 87.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 5.0e-46 188.3 103 83.5
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 6.6e-46 188.0 103 83.5
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 6.6e-46 188.0 103 83.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 8.6e-46 187.6 99 86.9
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 8.6e-46 187.6 110 78.2
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 8.6e-46 187.6 101 85.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 8.6e-46 187.6 101 85.1
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.5e-45 186.8 103 82.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.5e-45 186.8 103 83.5
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.5e-45 186.8 165 61.8
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.5e-45 186.8 103 83.5
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.5e-45 186.8 103 82.5
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.5e-45 186.8 102 85.3
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.9e-45 186.4 112 81.2
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.9e-45 186.4 103 82.5
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 3.3e-45 185.7 103 84.5
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 7.2e-45 184.5 100 84.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.2e-44 183.7 101 85.1
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.6e-44 183.3 103 80.6
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.6e-44 183.3 103 82.5
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.1e-44 183.0 104 80.8
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.8e-44 182.6 103 83.5
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 3.6e-44 182.2 103 83.5
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 3.6e-44 182.2 103 81.6
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 3.6e-44 182.2 103 81.6
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 3.6e-44 182.2 103 81.6
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.0e-43 180.6 103 80.6
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.8e-43 179.9 104 78.8
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.3e-43 179.5 103 81.6
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.3e-43 179.5 103 81.6
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 2.3e-43 179.5 103 81.6
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 3.0e-43 179.1 103 81.6
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 4.0e-43 178.7 102 78.4
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 4.0e-43 178.7 102 79.4
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 5.2e-43 178.3 99 80.8
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 6.8e-43 177.9 101 81.2
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.8e-43 177.9 103 80.6
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 8.9e-43 177.6 103 81.6
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 8.9e-43 177.6 103 80.6
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 8.9e-43 177.6 99 80.8
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.2e-42 177.2 101 81.2
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.2e-42 177.2 100 80.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.5e-42 176.8 101 80.2
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 2.6e-42 176.0 103 78.6
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.4e-42 175.6 102 76.5
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 3.4e-42 175.6 102 76.5
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 5.7e-42 174.9 107 79.4
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 9.8e-42 174.1 114 71.9
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 9.8e-42 174.1 103 77.7
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.3e-41 173.7 101 79.2
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.3e-41 173.7 101 83.2
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 2.8e-41 172.6 103 76.7
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.7e-41 172.2 101 81.2
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 4.9e-41 171.8 102 77.5
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.1e-40 170.6 99 78.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.1e-40 170.6 99 78.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.1e-40 170.6 92 84.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.4e-40 170.2 100 75.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 2.4e-40 169.5 99 74.7
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.4e-40 169.5 99 74.7
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 4.1e-40 168.7 105 76.2
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 7.0e-40 167.9 100 73.0
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 9.2e-40 167.5 102 71.6
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.2e-39 167.2 99 71.7
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.2e-39 167.2 98 74.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.2e-39 167.2 94 80.9
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 2.7e-39 166.0 115 65.2
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.7e-39 166.0 98 73.5
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 2.7e-39 166.0 99 72.7
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.7e-39 166.0 101 76.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 3.5e-39 165.6 98 72.4
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 3.5e-39 165.6 98 72.4
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 3.5e-39 165.6 98 72.4
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 3.5e-39 165.6 94 80.9
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 5.9e-39 164.9 98 71.4
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.0e-38 164.1 98 72.4
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 1.7e-38 163.3 94 78.7
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.3e-38 162.9 101 72.3
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 2.9e-38 162.5 98 71.4
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.1e-37 160.6 126 61.1
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.2e-34 150.6 100 66.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.5e-34 150.2 101 70.3
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 9.8e-34 147.5 92 71.7
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.7e-33 145.6 102 64.7
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 3.7e-33 145.6 102 63.7
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 1.6e-31 140.2 99 59.6
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 4.6e-31 138.7 74 87.8
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.3e-30 137.1 75 84.0
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.7e-30 136.7 74 85.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.0e-30 136.0 72 86.1
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 5.0e-30 135.2 71 85.9
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.1e-29 134.0 100 60.0
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.3e-29 132.5 100 53.0
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 5.6e-29 131.7 75 81.3
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.6e-28 129.0 71 84.5
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 8.0e-28 127.9 82 70.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.3e-27 126.3 71 81.7
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 4.0e-27 125.6 72 79.2
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 6.8e-27 124.8 74 78.4
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.3e-25 120.6 71 74.6
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 8.3e-25 117.9 77 63.6
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 8.3e-25 117.9 69 75.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-21 106.7 105 54.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-19 100.9 88 59.1
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 2.0e-18 96.7 64 75.0
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.3e-13 79.0 54 63.0
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 6.4e-09 65.1 64 51.6
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 1.9e-08 63.5 43 74.4
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 5.4e-08 62.0 34 82.4
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.2e-07 60.8 42 66.7
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 6.6e-06 55.1 31 83.9


User provided reference genes

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