Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.0e-99 366.7 181 100.0
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.6e-92 341.3 179 91.6
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.6e-92 341.3 179 91.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 4.6e-92 341.3 179 91.6
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 7.9e-92 340.5 181 90.1
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.0e-91 340.1 181 91.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.3e-91 339.0 179 89.4
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-91 339.0 179 89.4
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.3e-91 339.0 181 91.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.9e-91 338.2 181 89.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 8.7e-91 337.0 181 89.0
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-90 336.7 181 89.5
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.9e-90 335.9 181 88.4
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.5e-90 335.5 179 88.8
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.5e-90 335.5 181 89.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 7.4e-90 334.0 181 89.0
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 9.7e-90 333.6 181 89.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 9.7e-90 333.6 181 89.0
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 89.0
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.6e-89 332.8 181 90.1
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 2.8e-89 332.0 179 90.5
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.7e-89 331.6 181 88.4
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 87.3
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 87.8
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.3e-89 330.9 179 86.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.8e-88 329.3 181 88.4
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.3e-88 327.8 181 86.7
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.5e-87 326.2 181 87.3
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 88.4
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 84.5
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.6e-87 325.5 179 86.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 7.7e-87 323.9 181 87.3
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-86 323.6 182 86.3
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-86 323.2 181 86.7
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-86 322.8 181 85.6
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.9e-86 322.0 180 86.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 3.8e-86 321.6 176 88.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 3.8e-86 321.6 176 88.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.0e-86 321.2 176 88.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 6.5e-86 320.9 181 84.0
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 8.5e-86 320.5 176 86.9
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.9e-85 319.3 182 84.6
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 3.2e-85 318.5 176 86.9
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.2e-85 318.5 176 87.5
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 85.6
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 83.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.5e-85 317.8 181 83.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 5.5e-85 317.8 181 84.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 83.4
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 83.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 9.4e-85 317.0 181 83.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 9.4e-85 317.0 181 83.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 82.9
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 84.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 83.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 84.5
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 83.4
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.2e-84 316.6 180 86.7
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 82.3
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 4.6e-84 314.7 203 78.8
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 6.1e-84 314.3 181 82.3
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 84.0
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 82.9
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 82.9
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.4e-83 313.2 180 85.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.8e-83 312.8 167 90.4
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.8e-83 312.8 168 90.5
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.3e-83 312.4 175 85.7
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 3.0e-83 312.0 182 83.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 85.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 3.9e-83 311.6 182 83.0
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 3.9e-83 311.6 182 83.0
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 3.9e-83 311.6 182 83.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 82.3
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 82.3
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-83 311.2 174 86.8
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 84.0
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 82.9
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.1e-82 310.1 181 81.8
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.1e-82 310.1 182 82.4
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.1e-82 310.1 181 82.9
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.1e-82 310.1 174 86.2
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.1e-82 310.1 180 85.0
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 82.9
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.5e-82 308.9 182 82.4
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 80.1
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 82.9
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 5.7e-82 307.8 176 83.5
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.7e-82 307.8 170 85.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 9.7e-82 307.0 174 84.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.3e-81 306.6 175 84.0
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.3e-81 306.6 224 71.4
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.3e-81 306.6 180 83.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.3e-81 306.6 169 85.2
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 81.2
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 170 87.6
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 2.2e-81 305.8 170 85.3
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.8e-81 305.4 170 84.1
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 4.8e-81 304.7 177 83.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 8.2e-81 303.9 181 82.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 8.2e-81 303.9 183 82.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 8.2e-81 303.9 178 84.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 81.2
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 175 84.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.8e-80 302.8 178 83.7
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.8e-80 302.8 169 85.8
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 2.4e-80 302.4 178 83.1
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 6.9e-80 300.8 183 81.4
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 6.9e-80 300.8 183 81.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.9e-80 300.8 168 87.5
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 9.1e-80 300.4 178 83.7
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-78 297.0 177 83.6
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.0e-78 297.0 168 83.3
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 2.9e-78 295.4 168 85.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 3.8e-78 295.0 168 84.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.1e-77 293.5 169 84.0
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 2.5e-77 292.4 168 82.7
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.7e-76 288.9 178 79.8
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.6e-76 288.5 181 78.5
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.9e-76 287.3 181 79.0
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.0e-75 287.0 180 78.3
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-75 286.6 161 86.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 4.8e-73 278.1 168 81.0
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.6e-71 272.3 258 58.1
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 2.2e-70 269.2 167 73.7
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.1e-69 266.9 182 72.0
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 1.2e-68 263.5 180 72.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.7e-68 262.3 150 85.3
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.4e-66 255.0 181 72.9
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.3e-65 253.4 148 84.5
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.6e-63 246.5 175 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.6e-63 245.7 176 66.5
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.8e-62 241.9 176 66.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.0e-59 233.8 174 64.4
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.8e-51 206.5 134 76.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.3e-49 200.3 172 55.2
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.0e-47 193.0 172 60.5
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 6.8e-43 177.9 100 88.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.7e-39 166.0 102 80.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.5e-37 159.5 116 70.7
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.3e-33 147.1 174 43.1
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 4.6e-31 138.7 80 82.5
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.6e-28 129.0 75 82.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.6e-28 129.0 75 82.7
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 5.2e-27 125.2 179 38.5
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 6.8e-27 124.8 69 85.5
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.9e-22 109.0 57 87.7
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.9e-21 106.7 100 57.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 5.6e-21 105.1 62 79.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.6e-20 103.6 54 87.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.3e-19 99.8 206 38.3
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.5e-18 97.1 83 65.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 3.7e-17 92.4 166 34.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 1.4e-16 90.5 165 35.2
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 5.6e-13 78.6 90 47.8
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.1e-11 72.8 51 70.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 5.2e-11 72.0 45 73.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-10 70.9 37 86.5
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-10 70.9 88 46.6
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 2.6e-10 69.7 43 76.7
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 2.2e-09 66.6 38 84.2
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 8.4e-09 64.7 31 93.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-08 64.3 55 61.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 3.2e-08 62.8 50 62.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 1.2e-07 60.8 38 71.1
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 1.2e-07 60.8 38 71.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-07 60.5 42 66.7
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 2.1e-07 60.1 43 65.1


User provided reference genes

Program Settings