Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 7.4e-309 1063.1 583 100.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.9e-87 327.0 582 43.6
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 7.7e-80 302.4 525 43.2
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.1e-77 294.3 610 44.4
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 2.2e-74 284.3 608 40.1
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 1.1e-73 282.0 603 41.3
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.0e-71 275.4 590 41.5
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 4.2e-70 270.0 604 40.7
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.6e-69 268.1 624 39.1
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 3.6e-69 266.9 707 37.9
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.4e-67 260.0 584 39.7
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 4.8e-66 256.5 585 39.1
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.1e-65 253.8 587 38.8
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 7.0e-65 252.7 650 38.5
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.2e-64 251.9 612 41.5
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 3.8e-63 246.9 585 38.6
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.5e-62 245.0 446 43.0
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 9.4e-62 242.3 572 39.2
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.0e-60 237.3 613 38.0
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 4.0e-60 236.9 648 39.4
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.5e-59 235.0 611 38.5
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.4e-59 233.4 605 38.3
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 5.7e-59 233.0 607 36.4
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.3e-58 231.9 583 37.7
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-58 231.5 590 38.0
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 5.4e-57 226.5 692 35.0
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.2e-56 225.3 513 38.0
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 3.5e-56 223.8 467 38.5
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 7.7e-56 222.6 517 41.8
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.3e-55 221.9 616 39.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 5.5e-54 216.5 530 36.2
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 3.6e-53 213.8 606 36.1
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 4.7e-53 213.4 513 38.0
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.3e-52 211.1 576 36.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.2e-52 209.9 599 36.7
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.7e-51 206.5 602 35.7
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 9.8e-51 205.7 595 35.3
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 2.2e-50 204.5 603 34.7
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.1e-49 202.2 598 36.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 7.8e-48 196.1 596 35.2
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 1.0e-47 195.7 602 32.9
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 3.8e-47 193.7 604 35.9
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 2.5e-46 191.0 611 32.6
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 4.3e-46 190.3 505 36.0
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.5e-46 189.1 574 32.1
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.6e-45 188.3 615 36.4
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 2.8e-45 187.6 578 32.7
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 3.6e-45 187.2 507 34.7
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 6.8e-44 183.0 496 35.7
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.5e-43 181.8 602 34.9
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 2.0e-43 181.4 570 34.6
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 7.5e-43 179.5 587 35.6
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 2.2e-42 177.9 574 34.7
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 5.4e-41 173.3 604 32.9
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.2e-40 172.2 598 33.8
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.7e-40 171.0 578 35.5
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.5e-40 170.6 603 30.2
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.9e-40 169.9 589 35.3
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.0e-39 169.1 511 34.1
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.0e-39 167.5 592 31.8
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 5.0e-39 166.8 615 34.6
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 6.6e-39 166.4 572 33.9
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.2e-37 162.2 585 34.2
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.2e-37 162.2 577 31.2
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-36 158.7 295 40.3
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-36 158.7 295 40.3
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 4.0e-36 157.1 295 40.0
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.2e-35 155.6 261 43.3
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 4.4e-35 153.7 590 32.2
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.4e-35 153.7 291 39.2
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 5.8e-35 153.3 292 36.6
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 9.8e-35 152.5 287 39.4
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 9.8e-35 152.5 591 29.6
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.7e-34 151.8 286 38.5
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 4.9e-34 150.2 286 38.5
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.4e-33 148.7 603 33.2
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 2.4e-33 147.9 286 42.3
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 2.4e-33 147.9 286 42.3
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 3.2e-33 147.5 293 40.6
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 5.4e-33 146.7 288 38.9
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.2e-32 145.6 287 40.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 7.8e-32 142.9 632 30.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.0e-31 142.5 286 39.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.0e-31 142.5 598 30.1
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.3e-31 142.1 287 40.4
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.3e-31 142.1 484 30.8
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.7e-31 141.7 580 28.1
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.9e-30 138.3 202 42.1
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.5e-30 137.9 286 40.6
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 2.5e-30 137.9 583 28.0
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 4.3e-30 137.1 613 28.4
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 5.6e-30 136.7 487 31.8
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.1e-29 134.8 579 29.2
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.6e-29 134.0 562 30.4
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 8.1e-29 132.9 566 30.4
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.4e-28 132.1 571 29.4
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 2.3e-28 131.3 573 30.5
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.3e-28 131.3 395 31.9
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 6.8e-28 129.8 488 30.9
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 8.9e-28 129.4 286 36.7
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 3.4e-27 127.5 290 38.6
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.2e-26 124.8 532 25.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.9e-26 124.4 560 30.9
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 2.4e-25 121.3 497 29.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.4e-25 121.3 389 33.7
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.2e-25 120.9 555 26.7
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 9.2e-25 119.4 311 37.0
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.2e-24 119.0 234 35.0
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.1e-24 118.2 468 31.0
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.0e-23 115.9 251 34.3
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.1e-22 112.5 471 30.1
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 7.3e-22 109.8 571 29.2
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 4.0e-20 104.0 624 26.1
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 8.9e-20 102.8 187 39.6
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 2.7e-16 91.3 271 28.8
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.7e-15 88.6 399 27.8
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.3e-14 84.3 334 25.1
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 9.0e-12 76.3 224 28.1
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 1.2e-11 75.9 316 31.6
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.5e-11 75.5 276 28.3
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.3e-10 72.4 174 36.8
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 4.9e-10 70.5 148 37.8
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 6.4e-10 70.1 111 40.5
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 6.4e-10 70.1 286 27.6
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.9e-09 68.6 195 30.8
Cpa.g.sc23.6 Carica papaya HOM05D005642 ORTHO05D006672 6.0e-08 63.5 140 38.6
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 7.8e-08 63.2 188 27.7
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 5.1e-07 60.5 208 26.4
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 5.6e-06 57.0 205 25.4
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 9.6e-06 56.2 221 40.7


User provided reference genes

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