Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 4.3e-195 685.3 589 100.0
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 3.8e-151 539.3 600 88.3
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 3.7e-58 230.3 268 47.8
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 3.5e-56 223.8 258 48.8
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 7.8e-56 222.6 265 45.3
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 5.1e-55 219.9 258 46.1
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 5.1e-55 219.9 262 47.7
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 1.9e-54 218.0 274 47.1
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 4.3e-54 216.9 268 45.9
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 7.3e-54 216.1 273 47.6
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 2.1e-53 214.5 217 51.6
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 2.8e-53 214.2 266 47.7
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 4.7e-53 213.4 242 46.7
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 4.7e-53 213.4 242 46.7
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 8.1e-53 212.6 265 46.0
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 1.4e-52 211.8 268 45.9
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 1.8e-52 211.5 267 46.1
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 5.2e-52 209.9 202 50.5
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 6.8e-52 209.5 273 45.8
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 3.4e-51 207.2 212 48.1
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 5.8e-51 206.5 277 43.0
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 4.9e-50 203.4 211 48.8
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 4.9e-50 203.4 205 49.8
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 1.1e-49 202.2 211 48.8
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.4e-49 199.9 258 45.0
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 9.2e-49 199.1 240 44.2
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 7.8e-48 196.1 249 45.4
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 7.8e-48 196.1 235 42.6
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 1.0e-47 195.7 239 44.8
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 1.3e-47 195.3 239 44.4
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 2.3e-47 194.5 276 43.8
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 3.0e-47 194.1 242 44.6
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 6.6e-47 193.0 211 47.4
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.9e-46 191.4 214 45.8
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.3e-45 188.7 261 41.4
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 1.6e-45 188.3 207 49.3
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 2.1e-45 188.0 194 49.0
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 3.6e-45 187.2 256 41.8
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 3.6e-45 187.2 218 48.2
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 2.4e-44 184.5 249 40.2
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 2.4e-44 184.5 221 42.1
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 2.4e-44 184.5 249 40.2
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 4.0e-44 183.7 249 39.8
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 5.3e-44 183.3 198 50.0
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 6.9e-44 183.0 207 44.0
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 1.2e-43 182.2 212 45.8
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 1.5e-43 181.8 232 43.5
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 4.4e-43 180.3 209 45.9
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 7.6e-43 179.5 240 40.4
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 1.7e-42 178.3 240 40.0
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 2.2e-42 177.9 264 40.9
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 6.4e-42 176.4 247 41.7
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 8.4e-42 176.0 264 40.9
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 8.4e-42 176.0 248 41.5
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 1.1e-41 175.6 195 50.3
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 1.4e-41 175.3 214 45.8
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 1.9e-41 174.9 214 42.5
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 3.2e-41 174.1 249 39.4
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 1.2e-40 172.2 234 40.6
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 4.6e-40 170.2 245 42.4
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 1.3e-39 168.7 207 41.5
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 1.7e-39 168.3 226 43.4
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.3e-39 167.9 232 41.4
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 3.9e-39 167.2 204 44.6
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 5.1e-39 166.8 200 45.5
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 1.1e-38 165.6 260 40.4
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 1.5e-38 165.2 217 43.8
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 3.3e-38 164.1 223 42.2
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 2.1e-37 161.4 254 40.6
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 4.8e-37 160.2 255 40.0
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 4.0e-36 157.1 220 42.3
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 9.0e-36 156.0 211 41.2
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 2.0e-35 154.8 236 40.3
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 2.6e-35 154.5 236 40.3
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 5.8e-35 153.3 249 39.4
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 5.8e-35 153.3 188 47.3
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 7.6e-35 152.9 220 40.9
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 9.9e-35 152.5 213 37.6
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.2e-34 151.4 259 38.6
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 3.8e-34 150.6 224 39.7
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 3.0e-31 141.0 158 47.5
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 2.8e-29 134.4 166 39.2
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 4.8e-29 133.7 204 39.2
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 4.9e-26 123.6 153 37.3
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 1.1e-25 122.5 153 39.2
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 5.7e-22 110.2 204 35.3
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 7.4e-22 109.8 136 47.1
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 1.0e-18 99.4 161 36.0
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 6.5e-18 96.7 136 41.2
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 3.2e-17 94.4 175 34.3
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.6e-16 92.0 149 39.6
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 1.0e-15 89.4 97 48.5
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 1.0e-15 89.4 97 48.5
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.3e-14 84.0 165 38.2
RcHm_v2.0_Chr4g0419111 Rosa chinensis HOM05D007340 ORTHO05D008979 3.7e-13 80.9 80 48.8
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 6.9e-12 76.6 166 31.9
ATR0582G031 Amborella trichopoda HOM05D007340 ORTHO05D008979 1.5e-11 75.5 116 38.8
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 7.7e-11 73.2 127 33.9
CSS0037045 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.9e-10 71.2 61 55.7
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 2.9e-10 71.2 206 24.3
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 1.9e-09 68.6 223 26.0
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 4.2e-09 67.4 207 25.1
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 1.2e-08 65.9 66 47.0
CSS0022359 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 2.7e-08 64.7 60 53.3
Sc10g0005770 Simmondsia chinensis HOM05D006819 ORTHO05D008763 2.7e-08 64.7 220 25.0
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 3.6e-08 64.3 226 24.8
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 6.1e-08 63.5 217 21.2
Nn1g01889 Nelumbo nucifera HOM05D007340 ORTHO05D008979 6.1e-08 63.5 75 41.3
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 1.4e-07 62.4 216 22.2
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 1.4e-07 62.4 214 23.8
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 2.3e-07 61.6 225 22.2
Sc25g0002730 Simmondsia chinensis HOM05D006819 ORTHO05D008763 8.8e-07 59.7 160 26.9
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.5e-06 58.9 179 26.3
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 4.3e-06 57.4 219 21.0
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 7.4e-06 56.6 225 25.8
Prupe.3G082900 Prunus persica HOM05D006819 ORTHO05D008763 7.4e-06 56.6 205 22.9


User provided reference genes

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