Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03941 Eucalyptus grandis HOM05D005623 ORTHO05D007130 1.5e-48 196.1 110 100.0
Eucgr.C03666 Eucalyptus grandis HOM05D005623 ORTHO05D007130 9.9e-21 103.6 79 67.1
PGR102G2538 Punica granatum HOM05D005623 ORTHO05D007130 2.8e-15 85.5 59 67.8
VMungo0251G2698 Vigna mungo HOM05D005623 ORTHO05D007130 6.2e-15 84.3 59 67.8
CiPaw.04G152100 Carya illinoinensis HOM05D005623 ORTHO05D007130 8.1e-15 84.0 59 67.8
Ca_17399_v3 Cicer arietinum L. HOM05D005623 ORTHO05D007130 1.4e-14 83.2 59 64.4
Lalb_Chr05g0223571 Lupinus albus HOM05D005623 ORTHO05D007130 1.8e-14 82.8 59 66.1
QL02p063259 Quercus lobata HOM05D005623 ORTHO05D007130 2.4e-14 82.4 59 66.1
Glyma.05G222900 Glycine max HOM05D005623 ORTHO05D007130 5.2e-14 81.3 59 66.1
Medtr8g101730 Medicago truncatula HOM05D005623 ORTHO05D007130 5.2e-14 81.3 59 62.7
Phvul.002G304900 Phaseolus vulgaris HOM05D005623 ORTHO05D007130 9.0e-14 80.5 59 62.7
Potri.006G149500 Populus trichocarpa HOM05D005623 ORTHO05D007130 9.0e-14 80.5 59 64.4
TPR.G25466 Trifolium pratense HOM05D005623 ORTHO05D007130 1.2e-13 80.1 59 62.7
Lalb_Chr16g0390941 Lupinus albus HOM05D005623 ORTHO05D007130 2.0e-13 79.3 59 61.0
CANSAT56G1243 Cannabis sativa HOM05D005623 ORTHO05D007130 3.4e-13 78.6 59 62.7
FvH4_1g06970 Fragaria vesca HOM05D005623 ORTHO05D007130 4.4e-13 78.2 59 61.0
FAN23G2436 Fragaria x ananassa HOM05D005623 ORTHO05D007130 4.4e-13 78.2 59 61.0
FAN26G0941 Fragaria x ananassa HOM05D005623 ORTHO05D007130 4.4e-13 78.2 59 61.0
FAN26G2999 Fragaria x ananassa HOM05D005623 ORTHO05D007130 4.4e-13 78.2 59 61.0
Atru.chr7.1542 Acer truncatum HOM05D005623 ORTHO05D007130 5.8e-13 77.8 59 64.4
MD15G1203700 Malus domestica HOM05D005623 ORTHO05D007130 7.6e-13 77.4 59 62.7
Sabra06G0118200 Salix brachista HOM05D005623 ORTHO05D007130 7.6e-13 77.4 59 62.7
RcHm_v2.0_Chr2g0092921 Rosa chinensis HOM05D005623 ORTHO05D007130 9.9e-13 77.0 59 59.3
Ah.14g086080 Amaranthus hybridus HOM05D005623 ORTHO05D007130 1.3e-12 76.6 59 62.7
Gohir.A06G071000 Gossypium hirsutum HOM05D005623 ORTHO05D007130 1.3e-12 76.6 59 64.4
Gorai.010G081300 Gossypium raimondii HOM05D005623 ORTHO05D007130 1.3e-12 76.6 59 64.4
GSVIVG01015237001 Vitis vinifera HOM05D005623 ORTHO05D007130 1.3e-12 76.6 59 62.7
ATR0789G174 Amborella trichopoda HOM05D005623 ORTHO05D007130 1.7e-12 76.3 59 64.4
Psat7g019600 Pisum sativum HOM05D005623 ORTHO05D007130 1.7e-12 76.3 59 62.7
Prupe.7G213700 Prunus persica HOM05D005623 ORTHO05D007130 1.7e-12 76.3 59 61.0
Gohir.D06G069700 Gossypium hirsutum HOM05D005623 ORTHO05D007130 2.2e-12 75.9 59 64.4
Manes.16G104200 Manihot esculenta HOM05D005623 ORTHO05D007130 2.9e-12 75.5 59 62.7
ClCG03G015820 Citrullus lanatus HOM05D005623 ORTHO05D007130 3.8e-12 75.1 59 61.0
Sed0005617 Sechium edule HOM05D005623 ORTHO05D007130 4.9e-12 74.7 58 62.1
MELO3C015446.2 Cucumis melo HOM05D005623 ORTHO05D007130 6.4e-12 74.3 59 61.0
ECA234G3237 Erigeron canadensis HOM05D005623 ORTHO05D007130 6.4e-12 74.3 59 59.3
Migut.J00444 Erythranthe guttata HOM05D005623 ORTHO05D007130 6.4e-12 74.3 59 61.0
Nitab4.5_0000713g0170 Nicotiana tabacum HOM05D005623 ORTHO05D007130 6.4e-12 74.3 59 61.0
TWI34G0204 Tripterygium wilfordii HOM05D005623 ORTHO05D007130 6.4e-12 74.3 59 57.6
FAN19G1723 Fragaria x ananassa HOM05D005623 ORTHO05D007130 8.4e-12 73.9 59 57.6
FAN28G0299 Fragaria x ananassa HOM05D005623 ORTHO05D007130 8.4e-12 73.9 59 57.6
Cc06_g11060 Coffea canephora HOM05D005623 ORTHO05D007130 1.1e-11 73.6 59 62.7
Dinv42293 Davidia involucrata HOM05D005623 ORTHO05D007130 1.1e-11 73.6 59 61.0
MBI04_g11706_MAGBIO Magnolia biondii HOM05D005623 ORTHO05D007130 1.1e-11 73.6 59 59.3
COL.COLO4_18232 Corchorus olitorius HOM05D005623 ORTHO05D007130 1.4e-11 73.2 59 61.0
Nitab4.5_0007297g0030 Nicotiana tabacum HOM05D005623 ORTHO05D007130 1.4e-11 73.2 59 61.0
EL10Ac8g19268 Beta vulgaris HOM05D005623 ORTHO05D007130 1.9e-11 72.8 59 57.6
Lj4A313G21 Lonicera japonica HOM05D005623 ORTHO05D007130 1.9e-11 72.8 59 61.0
THA.LOC104814603 Tarenaya hassleriana HOM05D005623 ORTHO05D007130 1.9e-11 72.8 59 62.7
TAR624G0131 Trochodendron aralioides HOM05D005623 ORTHO05D007130 1.9e-11 72.8 59 59.3
CsaV3_1G040190 Cucumis sativus L. HOM05D005623 ORTHO05D007130 2.4e-11 72.4 59 59.3
CsaV3_UNG058470 Cucumis sativus L. HOM05D005623 ORTHO05D007130 2.4e-11 72.4 59 59.3
Thecc.09G093300 Theobroma cacao HOM05D005623 ORTHO05D007130 2.4e-11 72.4 59 61.0
vmacro10811 Vaccinium macrocarpon HOM05D005623 ORTHO05D007130 2.4e-11 72.4 59 62.7
CSS0001651 Camellia sinensis var. sinensis HOM05D005623 ORTHO05D007130 3.2e-11 72.0 59 59.3
Ciclev10007793m.g Citrus clementina HOM05D005623 ORTHO05D007130 3.2e-11 72.0 59 59.3
Duzib187G0326 Durio zibethinus HOM05D005623 ORTHO05D007130 3.2e-11 72.0 59 59.3
Lj4g0010059 Lotus japonicus HOM05D005623 ORTHO05D007130 3.2e-11 72.0 59 57.6
PSO210G1449 Papaver somniferum HOM05D005623 ORTHO05D007130 3.2e-11 72.0 59 61.0
Haze_25882 Corylus avellana HOM05D005623 ORTHO05D007130 4.2e-11 71.6 59 62.7
Peaxi162Scf00264g00083 Petunia axillaris HOM05D005623 ORTHO05D007130 4.2e-11 71.6 59 59.3
Lsat_1_v5_gn_5_145881 Lactuca sativa HOM05D005623 ORTHO05D007130 5.4e-11 71.2 59 57.6
AUR62031248 Chenopodium quinoa HOM05D005623 ORTHO05D007130 7.1e-11 70.9 58 60.3
Nn8g38917 Nelumbo nucifera HOM05D005623 ORTHO05D007130 7.1e-11 70.9 59 57.6
Sc14g0000790 Simmondsia chinensis HOM05D005623 ORTHO05D007130 9.3e-11 70.5 59 57.6
Solyc07g026960.3 Solanum lycopersicum HOM05D005623 ORTHO05D007130 9.3e-11 70.5 59 59.3
Sopen07g014810 Solanum pennellii HOM05D005623 ORTHO05D007130 9.3e-11 70.5 59 59.3
Actinidia25269 Actinidia chinensis HOM05D005623 ORTHO05D007130 1.2e-10 70.1 59 61.0
Aa31LG2G20980 Aethionema arabicum HOM05D005623 ORTHO05D007130 1.2e-10 70.1 59 57.6
arahy.Tifrunner.gnm1.ann1.G7AZGE Arachis hypogaea HOM05D005623 ORTHO05D007130 1.2e-10 70.1 59 61.0
Thhalv10025013m.g Eutrema salsugineum HOM05D005623 ORTHO05D007130 1.6e-10 69.7 59 59.3
SGA_v2.0_scaffold10G05202 Striga asiatica HOM05D005623 ORTHO05D007130 1.6e-10 69.7 59 61.0
HanXRQChr10g0319101 Helianthus annuus HOM05D005623 ORTHO05D007130 2.1e-10 69.3 59 55.9
Rhsim05G0035400 Rhododendron simsii HOM05D005623 ORTHO05D007130 2.1e-10 69.3 93 45.2
HPP92_000613 Vanilla planifolia HOM05D005623 ORTHO05D007130 2.1e-10 69.3 59 55.9
MSTRG.6040 Avicennia marina HOM05D005623 ORTHO05D007130 2.7e-10 68.9 59 59.3
CARHR237320 Cardamine hirsuta HOM05D005623 ORTHO05D007130 2.7e-10 68.9 59 57.6
SalBow6G5356 Salvia bowleyana HOM05D005623 ORTHO05D007130 4.6e-10 68.2 59 57.6
Os02g0224400 Oryza sativa ssp. japonica HOM05D005623 ORTHO05D007130 7.8e-10 67.4 59 55.9
vmacro00758 Vaccinium macrocarpon HOM05D005623 ORTHO05D007130 7.8e-10 67.4 59 59.3
AT4G29490 Arabidopsis thaliana HOM05D005623 ORTHO05D007130 1.3e-09 66.6 59 55.9
PSO210G3522 Papaver somniferum HOM05D005623 ORTHO05D007130 1.3e-09 66.6 59 57.6
Sp7g27360 Schrenkiella parvula HOM05D005623 ORTHO05D007130 3.0e-09 65.5 59 54.2
Zm00001eb239790 Zea mays HOM05D005623 ORTHO05D007130 3.0e-09 65.5 59 52.5
DCAR_024065 Daucus carota HOM05D005623 ORTHO05D007130 5.1e-09 64.7 59 54.2
Hund25843 Selenicereus undatus HOM05D005623 ORTHO05D007130 5.1e-09 64.7 57 50.9
AL7G22900 Arabidopsis lyrata HOM05D005623 ORTHO05D007130 1.9e-08 62.8 49 61.2
unitig_26.g9166 Utricularia gibba HOM05D005623 ORTHO05D007130 3.3e-08 62.0 59 54.2
AUR62027454 Chenopodium quinoa HOM05D005623 ORTHO05D007130 9.6e-08 60.5 59 54.2
Nn1g05571 Nelumbo nucifera HOM05D005623 ORTHO05D007130 1.3e-07 60.1 59 49.2
Pp3c22_16460 Physcomitrium patens HOM05D005623 ORTHO05D007130 4.8e-07 58.2 59 45.8


User provided reference genes

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