Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 5.6e-129 465.7 623 100.0
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.3e-44 183.7 228 73.7
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 8.0e-43 179.5 228 73.7
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 8.3e-40 169.5 622 75.9
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 4.1e-39 167.2 231 69.7
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 9.2e-39 166.0 230 70.9
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.7e-38 164.5 209 75.1
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 3.5e-38 164.1 231 68.8
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 7.8e-38 162.9 230 69.1
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 1.1e-36 159.1 228 71.1
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 1.9e-36 158.3 211 73.9
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.5e-36 157.9 230 69.1
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 4.3e-36 157.1 231 69.3
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.6e-35 155.2 230 69.6
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.1e-35 154.8 230 68.7
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 3.6e-35 154.1 231 69.7
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 4.7e-35 153.7 228 68.9
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 8.9e-34 149.4 230 70.4
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 2.0e-33 148.3 231 71.0
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 2.0e-33 148.3 231 67.5
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 4.4e-33 147.1 227 68.3
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.4e-33 147.1 231 69.3
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 5.8e-33 146.7 192 74.0
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-32 145.6 231 69.7
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 1.3e-32 145.6 217 69.6
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.7e-32 145.2 203 71.4
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.7e-32 145.2 231 67.5
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.2e-32 144.8 227 68.7
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 2.2e-32 144.8 228 61.8
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.9e-32 144.4 230 65.2
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 2.9e-32 144.4 231 66.7
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 4.9e-32 143.7 211 69.7
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 4.9e-32 143.7 229 64.2
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 4.9e-32 143.7 228 68.0
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.1e-31 142.5 232 66.8
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.1e-31 142.5 229 65.1
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.1e-31 142.5 231 65.8
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.4e-31 142.1 231 69.3
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 1.4e-31 142.1 230 67.0
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.9e-31 141.7 230 69.1
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.9e-31 141.7 231 65.4
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.4e-31 141.4 229 63.8
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 2.4e-31 141.4 202 73.3
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.2e-31 141.0 230 65.2
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 3.2e-31 141.0 228 62.7
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.4e-31 140.2 188 77.1
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 9.2e-31 139.4 231 37.7
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 1.2e-30 139.0 230 64.8
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.6e-30 138.7 220 70.0
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.0e-30 138.3 230 64.8
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.0e-30 136.7 202 72.3
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.0e-29 136.0 231 65.4
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-29 135.6 231 65.8
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.3e-29 135.6 230 64.8
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-29 135.2 230 64.8
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.7e-29 135.2 178 79.8
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 2.3e-29 134.8 201 73.1
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 3.9e-29 134.0 229 64.6
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 6.6e-29 133.3 231 63.6
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 8.6e-29 132.9 231 64.1
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 8.6e-29 132.9 231 64.1
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.1e-28 132.5 207 70.5
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.5e-28 131.3 227 64.3
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.5e-28 131.3 116 60.3
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 3.3e-28 131.0 223 63.7
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.3e-28 131.0 234 64.1
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 4.3e-28 130.6 233 65.7
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 9.5e-28 129.4 116 62.1
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 9.5e-28 129.4 231 59.3
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.8e-27 127.9 231 46.3
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 2.8e-27 127.9 230 63.9
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 4.7e-27 127.1 231 64.1
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 6.2e-27 126.7 230 61.7
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 6.2e-27 126.7 222 44.1
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 6.2e-27 126.7 233 63.1
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.2e-27 126.7 224 62.5
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.1e-26 125.9 215 67.9
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.1e-26 125.9 215 67.9
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.4e-26 125.6 228 60.5
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 2.3e-26 124.8 186 73.7
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.3e-26 124.8 186 73.7
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 4.0e-26 124.0 186 73.7
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.0e-26 124.0 217 50.2
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 4.0e-26 124.0 186 73.7
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 5.2e-26 123.6 230 61.3
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.2e-26 123.6 191 71.7
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 6.8e-26 123.2 186 74.2
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 6.8e-26 123.2 205 70.2
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.8e-26 123.2 224 60.3
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 8.9e-26 122.9 186 73.7
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 8.9e-26 122.9 165 74.5
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 8.9e-26 122.9 231 60.2
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 1.2e-25 122.5 186 73.7
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 1.2e-25 122.5 186 73.7
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 1.5e-25 122.1 166 80.7
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 3.4e-25 120.9 186 73.1
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 3.4e-25 120.9 186 73.1
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 3.4e-25 120.9 191 71.2
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.4e-25 120.9 191 71.2
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 7.5e-25 119.8 217 62.7
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 7.5e-25 119.8 229 33.2
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 9.9e-25 119.4 95 64.2
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.7e-24 118.6 214 59.8
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 3.7e-24 117.5 230 63.0
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 6.4e-24 116.7 115 55.7
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.9e-23 115.2 111 56.8
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.9e-23 115.2 183 71.0
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.1e-23 114.0 231 62.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 5.4e-23 113.6 227 63.4
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 5.4e-23 113.6 202 59.9
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 7.1e-23 113.2 188 64.9
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 7.1e-23 113.2 188 34.6
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 9.2e-23 112.8 188 64.9
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 9.2e-23 112.8 188 64.9
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 9.2e-23 112.8 188 64.9
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 9.2e-23 112.8 188 64.9
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 1.2e-22 112.5 188 62.2
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.6e-22 112.1 231 55.4
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.6e-22 112.1 187 34.8
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.6e-22 112.1 187 56.1
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.1e-22 111.7 99 61.6
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 2.1e-22 111.7 110 54.5
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 2.7e-22 111.3 230 47.0
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 2.7e-22 111.3 231 36.8
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.7e-22 111.3 187 57.2
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.5e-22 110.9 234 30.3
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.6e-22 110.5 203 62.1
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.6e-22 110.5 186 69.9
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 6.0e-22 110.2 188 34.0
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 7.8e-22 109.8 210 55.7
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.3e-21 109.0 167 80.2
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.7e-21 108.6 203 65.5
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.7e-21 108.6 167 77.8
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.7e-21 108.6 98 62.2
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 3.0e-21 107.8 182 69.2
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 3.9e-21 107.5 231 54.1
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 3.9e-21 107.5 188 41.5
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 5.1e-21 107.1 107 53.3
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 5.1e-21 107.1 188 64.4
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.6e-21 106.7 231 55.8
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 1.5e-20 105.5 203 62.1
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.9e-20 105.1 188 63.3
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 2.5e-20 104.8 167 76.6
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 2.5e-20 104.8 77 70.1
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 2.5e-20 104.8 185 65.4
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.3e-20 104.4 231 55.4
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 4.3e-20 104.0 231 44.6
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 4.3e-20 104.0 224 58.9
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 5.6e-20 103.6 203 60.6
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 7.3e-20 103.2 229 57.2
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 9.5e-20 102.8 224 56.2
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 1.2e-19 102.4 98 58.2
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.2e-19 102.4 118 51.7
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.6e-19 102.1 192 65.6
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 2.1e-19 101.7 198 64.1
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.8e-19 101.3 79 65.8
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 6.2e-19 100.1 224 60.7
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 8.1e-19 99.8 167 73.1
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 3.1e-18 97.8 157 36.9
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 5.2e-18 97.1 229 59.8
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 5.2e-18 97.1 75 64.0
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 1.2e-17 95.9 191 28.8
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.3e-16 92.4 115 43.5
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.7e-16 92.0 202 30.2
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 1.7e-16 92.0 212 60.8
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 1.4e-15 89.0 199 62.3
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 1.4e-15 89.0 199 62.3
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.1e-15 86.7 169 30.8
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 5.1e-13 80.5 143 42.0
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 8.7e-13 79.7 160 33.1
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 8.7e-13 79.7 107 44.9
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 4.7e-11 73.9 65 52.3
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 6.2e-11 73.6 89 40.4
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 6.9e-10 70.1 143 36.4
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 2.6e-09 68.2 41 68.3
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 5.8e-09 67.0 40 75.0
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 5.8e-09 67.0 74 40.5
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 7.6e-09 66.6 37 73.0
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 7.6e-09 66.6 49 65.3
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 2.9e-08 64.7 71 47.9
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.9e-08 64.7 112 40.2
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.9e-08 63.9 138 34.1
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 1.2e-06 59.3 144 34.0
Psat7g013440 Pisum sativum HOM05D003689 ORTHO05D003950 3.5e-06 57.8 39 56.4
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 7.8e-06 56.6 91 38.5


User provided reference genes

Program Settings