Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.1e-42 176.4 97 100.0
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.7e-24 115.9 97 72.2
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 7.4e-20 100.5 102 63.7
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 2.1e-19 99.0 104 61.5
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 4.0e-18 94.7 98 59.2
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 5.3e-18 94.4 102 60.8
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.5e-17 92.8 96 62.5
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.5e-17 92.8 105 59.0
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 3.4e-17 91.7 98 62.2
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.3e-16 89.7 102 57.8
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.3e-16 89.7 102 57.8
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.7e-16 89.4 99 61.6
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.1e-15 86.7 102 56.9
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.1e-15 86.7 105 59.0
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.1e-15 86.7 96 60.4
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 1.9e-15 85.9 102 57.8
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 2.5e-15 85.5 97 57.7
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 3.2e-15 85.1 105 55.2
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.2e-15 85.1 108 52.8
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 3.2e-15 85.1 108 52.8
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 4.2e-15 84.7 99 58.6
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 5.5e-15 84.3 92 58.7
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 5.5e-15 84.3 103 58.3
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 7.1e-15 84.0 101 57.4
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 7.1e-15 84.0 100 63.0
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 9.3e-15 83.6 100 60.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 1.2e-14 83.2 102 56.9
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 1.2e-14 83.2 103 57.3
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.2e-14 83.2 102 55.9
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.6e-14 82.8 101 55.4
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.6e-14 82.8 96 55.2
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.6e-14 82.8 98 57.1
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.6e-14 82.8 102 54.9
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.1e-14 82.4 100 62.0
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 2.1e-14 82.4 99 61.6
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 2.1e-14 82.4 93 53.8
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 2.1e-14 82.4 98 61.2
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.1e-14 82.4 104 56.7
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.7e-14 82.0 103 58.3
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.5e-14 81.6 101 53.5
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 3.5e-14 81.6 97 59.8
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.5e-14 81.6 105 54.3
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.9e-14 80.5 101 61.4
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.9e-14 80.5 98 58.2
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 1.0e-13 80.1 101 54.5
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.3e-13 79.7 97 57.7
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.3e-13 79.7 106 52.8
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.3e-13 79.7 106 54.7
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.8e-13 79.3 101 54.5
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 2.3e-13 79.0 98 58.2
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 3.9e-13 78.2 97 53.6
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 6.7e-13 77.4 104 52.9
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 6.7e-13 77.4 106 51.9
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 6.7e-13 77.4 104 55.8
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 8.7e-13 77.0 102 53.9
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.1e-12 76.6 104 51.9
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.9e-12 75.9 98 53.1
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 2.5e-12 75.5 99 53.5
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 3.3e-12 75.1 97 53.6
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.3e-12 74.7 115 48.7
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 5.7e-12 74.3 96 54.2
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 7.4e-12 73.9 96 56.2
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 7.4e-12 73.9 99 53.5
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 9.7e-12 73.6 96 55.2
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 1.3e-11 73.2 98 52.0
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 1.3e-11 73.2 98 52.0
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.6e-11 72.8 104 53.8
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.6e-11 72.8 95 53.7
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.6e-11 72.8 107 52.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 2.2e-11 72.4 98 51.0
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 2.8e-11 72.0 95 54.7
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 2.8e-11 72.0 97 52.6
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 3.7e-11 71.6 98 51.0
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 3.7e-11 71.6 98 51.0
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 3.7e-11 71.6 91 54.9
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 4.8e-11 71.2 98 55.1
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 4.8e-11 71.2 61 68.9
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 4.8e-11 71.2 92 58.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 6.3e-11 70.9 100 49.0
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 8.2e-11 70.5 98 51.0
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 5.3e-10 67.8 68 57.4
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 5.3e-10 67.8 93 58.1
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 6.9e-10 67.4 95 49.5
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 6.9e-10 67.4 97 49.5
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 9.0e-10 67.0 89 52.8
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 1.5e-09 66.2 96 47.9
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 2.0e-09 65.9 97 50.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 2.0e-09 65.9 97 50.5
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 2.6e-09 65.5 96 51.0
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.4e-09 65.1 59 67.8
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.7e-08 62.8 98 46.9
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 2.9e-08 62.0 94 51.1
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 2.9e-08 62.0 98 53.1
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 3.8e-08 61.6 83 51.8
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 3.8e-08 61.6 94 43.6
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 5.0e-08 61.2 98 46.9
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 5.0e-08 61.2 55 65.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 5.0e-08 61.2 88 47.7
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 8.5e-08 60.5 98 45.9
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.1e-07 60.1 91 48.4
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.4e-07 59.7 88 48.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.9e-07 59.3 98 45.9
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.2e-07 58.5 97 44.3
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 3.2e-07 58.5 94 45.7
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 7.2e-07 57.4 93 44.1
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.2e-06 56.6 96 44.8
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.2e-06 56.6 98 42.9
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 1.2e-06 56.6 94 44.7
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 1.2e-06 56.6 87 46.0
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.1e-06 55.8 97 38.1
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 2.1e-06 55.8 98 42.9
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 3.6e-06 55.1 96 42.7
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 3.6e-06 55.1 70 51.4
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 3.6e-06 55.1 88 43.2
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 4.6e-06 54.7 100 41.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 4.6e-06 54.7 64 51.6
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 4.6e-06 54.7 41 63.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 4.6e-06 54.7 83 45.8
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 6.1e-06 54.3 80 46.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.1e-06 54.3 100 42.0
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 6.1e-06 54.3 64 46.9
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 6.1e-06 54.3 104 43.3
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 6.1e-06 54.3 95 45.3
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 7.9e-06 53.9 82 46.3
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 7.9e-06 53.9 68 48.5
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 7.9e-06 53.9 93 44.1


User provided reference genes

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