Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03804 Eucalyptus grandis HOM05D005048 ORTHO05D006420 4.1e-281 970.7 480 100.0
PGR102G2767 Punica granatum HOM05D005048 ORTHO05D006420 3.8e-218 761.5 483 78.1
QL10p015858 Quercus lobata HOM05D005048 ORTHO05D006420 3.7e-213 745.0 472 76.9
CiPaw.04G161700 Carya illinoinensis HOM05D005048 ORTHO05D006420 1.1e-212 743.4 474 77.6
Haze_25781 Corylus avellana HOM05D005048 ORTHO05D006420 4.1e-212 741.5 482 76.3
GSVIVG01015352001 Vitis vinifera HOM05D005048 ORTHO05D006420 1.9e-209 732.6 478 76.6
TAR383G0565 Trochodendron aralioides HOM05D005048 ORTHO05D006420 1.6e-208 729.6 472 75.2
Glyma.05G229400 Glycine max HOM05D005048 ORTHO05D006420 6.1e-208 727.6 464 78.0
Lj4g0020985 Lotus japonicus HOM05D005048 ORTHO05D006420 6.1e-208 727.6 472 76.7
Prupe.7G225700 Prunus persica HOM05D005048 ORTHO05D006420 2.3e-207 725.7 471 75.6
Ciclev10008139m.g Citrus clementina HOM05D005048 ORTHO05D006420 3.9e-207 724.9 472 75.4
Glyma.14G218300 Glycine max HOM05D005048 ORTHO05D006420 5.2e-207 724.5 464 77.6
Hma1.2p1_1151F.1_g261870 Hydrangea macrophylla HOM05D005048 ORTHO05D006420 5.2e-207 724.5 471 75.8
Cfa003227 Carpinus fangiana HOM05D005048 ORTHO05D006420 3.3e-206 721.8 475 76.0
Gorai.001G007100 Gossypium raimondii HOM05D005048 ORTHO05D006420 4.4e-206 721.5 477 74.2
arahy.Tifrunner.gnm1.ann1.T6QICJ Arachis hypogaea HOM05D005048 ORTHO05D006420 5.7e-206 721.1 469 75.9
arahy.Tifrunner.gnm1.ann1.TTP0Q7 Arachis hypogaea HOM05D005048 ORTHO05D006420 5.7e-206 721.1 469 75.9
RcHm_v2.0_Chr2g0091251 Rosa chinensis HOM05D005048 ORTHO05D006420 1.3e-205 719.9 471 75.6
Lalb_Chr05g0223041 Lupinus albus HOM05D005048 ORTHO05D006420 1.7e-205 719.5 473 76.1
MD02G1057100 Malus domestica HOM05D005048 ORTHO05D006420 4.8e-205 718.0 471 75.6
Ca_17323_v3 Cicer arietinum L. HOM05D005048 ORTHO05D006420 2.4e-204 715.7 473 76.7
Potri.017G118801 Populus trichocarpa HOM05D005048 ORTHO05D006420 2.4e-204 715.7 468 75.4
Gohir.D07G007400 Gossypium hirsutum HOM05D005048 ORTHO05D006420 5.3e-204 714.5 477 73.6
Gohir.A07G004800 Gossypium hirsutum HOM05D005048 ORTHO05D006420 9.1e-204 713.8 473 74.0
Thecc.09G106000 Theobroma cacao HOM05D005048 ORTHO05D006420 2.0e-203 712.6 472 73.5
Actinidia32670 Actinidia chinensis HOM05D005048 ORTHO05D006420 2.6e-203 712.2 477 72.7
TPR.G23489 Trifolium pratense HOM05D005048 ORTHO05D006420 1.3e-202 709.9 477 74.6
Aqoxy5G01302 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 6.5e-202 707.6 479 72.9
Rhsim03G0239600 Rhododendron simsii HOM05D005048 ORTHO05D006420 6.5e-202 707.6 485 71.3
Cc01_g04910 Coffea canephora HOM05D005048 ORTHO05D006420 1.5e-201 706.4 478 73.2
FvH4_1g05550 Fragaria vesca HOM05D005048 ORTHO05D006420 1.9e-201 706.1 474 73.4
FAN23G2083 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.9e-201 706.1 474 73.8
Medtr8g103060 Medicago truncatula HOM05D005048 ORTHO05D006420 7.2e-201 704.1 472 75.2
FAN28G0981 Fragaria x ananassa HOM05D005048 ORTHO05D006420 2.7e-200 702.2 487 72.1
TWI60G0019 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 2.7e-200 702.2 483 72.5
Sabra17G0098100 Salix brachista HOM05D005048 ORTHO05D006420 3.0e-199 698.7 494 70.9
VMungo0251G3001 Vigna mungo HOM05D005048 ORTHO05D006420 1.2e-198 696.8 532 67.5
PGSC0003DMG400018273 Solanum tuberosum HOM05D005048 ORTHO05D006420 1.5e-198 696.4 470 73.2
Sopen01g044930 Solanum pennellii HOM05D005048 ORTHO05D006420 2.6e-198 695.7 470 73.0
Oeu026966.2 Olea europaea HOM05D005048 ORTHO05D006420 7.5e-198 694.1 468 70.7
Aqoxy1G00313 Aquilegia oxysepala HOM05D005048 ORTHO05D006420 2.2e-197 692.6 479 71.0
TWI81G0001 Tripterygium wilfordii HOM05D005048 ORTHO05D006420 3.7e-197 691.8 478 72.2
Nn2g11663 Nelumbo nucifera HOM05D005048 ORTHO05D006420 1.4e-196 689.9 473 71.0
EL10Ac8g18435 Beta vulgaris HOM05D005048 ORTHO05D006420 1.0e-194 683.7 511 66.9
MELO3C006282.2 Cucumis melo HOM05D005048 ORTHO05D006420 1.3e-194 683.3 478 70.3
CsaV3_3G010630 Cucumis sativus L. HOM05D005048 ORTHO05D006420 1.3e-194 683.3 478 70.1
Migut.D01920 Erythranthe guttata HOM05D005048 ORTHO05D006420 2.9e-194 682.2 468 71.2
CAN.G1379.35 Capsicum annuum HOM05D005048 ORTHO05D006420 3.8e-194 681.8 480 70.8
ClCG05G003020 Citrullus lanatus HOM05D005048 ORTHO05D006420 3.8e-194 681.8 486 69.8
FAN19G2567 Fragaria x ananassa HOM05D005048 ORTHO05D006420 3.8e-194 681.8 474 71.7
Hund09223 Selenicereus undatus HOM05D005048 ORTHO05D006420 3.8e-194 681.8 477 71.1
COL.COLO4_37106 Corchorus olitorius HOM05D005048 ORTHO05D006420 5.0e-194 681.4 511 68.3
PSO210G2605 Papaver somniferum HOM05D005048 ORTHO05D006420 1.1e-193 680.2 501 68.1
ECA240G4205 Erigeron canadensis HOM05D005048 ORTHO05D006420 1.5e-193 679.9 468 71.4
HanXRQChr03g0061391 Helianthus annuus HOM05D005048 ORTHO05D006420 1.9e-193 679.5 471 70.9
Cpa.g.sc23.64 Carica papaya HOM05D005048 ORTHO05D006420 9.4e-193 677.2 498 68.5
Lsat_1_v5_gn_7_41421 Lactuca sativa HOM05D005048 ORTHO05D006420 2.3e-191 672.5 471 70.7
AL7G19480 Arabidopsis lyrata HOM05D005048 ORTHO05D006420 1.2e-190 670.2 473 70.6
Sp7g30130 Schrenkiella parvula HOM05D005048 ORTHO05D006420 6.3e-189 664.5 471 70.5
BcaB08g35458 Brassica carinata HOM05D005048 ORTHO05D006420 1.1e-188 663.7 463 69.1
THA.LOC104799066 Tarenaya hassleriana HOM05D005048 ORTHO05D006420 2.4e-188 662.5 469 69.3
Aa31LG2G18290 Aethionema arabicum HOM05D005048 ORTHO05D006420 5.4e-188 661.4 482 68.7
SalBow2G2764 Salvia bowleyana HOM05D005048 ORTHO05D006420 1.2e-187 660.2 476 70.0
Carub.0007s0821 Capsella rubella HOM05D005048 ORTHO05D006420 2.0e-187 659.4 472 69.3
Duzib168G1040 Durio zibethinus HOM05D005048 ORTHO05D006420 3.8e-186 655.2 472 69.1
Thhalv10013379m.g Eutrema salsugineum HOM05D005048 ORTHO05D006420 7.2e-185 651.0 475 68.2
A10p08040 Brassica napus HOM05D005048 ORTHO05D006420 1.4e-183 646.7 464 68.8
BraSC35t45995Z Brassica rapa HOM05D005048 ORTHO05D006420 4.0e-183 645.2 464 68.5
HPP92_003926 Vanilla planifolia HOM05D005048 ORTHO05D006420 8.9e-183 644.0 482 65.4
vmacro06232 Vaccinium macrocarpon HOM05D005048 ORTHO05D006420 1.5e-182 643.3 479 67.2
C09p39250 Brassica napus HOM05D005048 ORTHO05D006420 1.3e-181 640.2 462 68.0
BolC9t56804H Brassica oleracea HOM05D005048 ORTHO05D006420 1.3e-181 640.2 462 68.0
Os02g0277600 Oryza sativa ssp. japonica HOM05D005048 ORTHO05D006420 2.0e-179 632.9 491 65.6
SGA_v2.0_scaffold58G20419 Striga asiatica HOM05D005048 ORTHO05D006420 2.0e-179 632.9 473 67.4
ATR0315G096 Amborella trichopoda HOM05D005048 ORTHO05D006420 1.8e-175 619.8 469 65.9
unitig_0.g799 Utricularia gibba HOM05D005048 ORTHO05D006420 2.6e-174 615.9 473 65.5
Ah.14g082380 Amaranthus hybridus HOM05D005048 ORTHO05D006420 2.3e-170 602.8 473 64.9
Peaxi162Scf00231g00512 Petunia axillaris HOM05D005048 ORTHO05D006420 1.5e-169 600.1 470 65.1
Nitab4.5_0004090g0040 Nicotiana tabacum HOM05D005048 ORTHO05D006420 2.1e-168 596.3 406 72.2
Nitab4.5_0000399g0090 Nicotiana tabacum HOM05D005048 ORTHO05D006420 4.9e-165 585.1 406 71.2
BcaC04g20784 Brassica carinata HOM05D005048 ORTHO05D006420 6.4e-165 584.7 461 63.3
Mapoly0125s0046 Marchantia polymorpha HOM05D005048 ORTHO05D006420 3.2e-164 582.4 461 63.3
AUR62021458 Chenopodium quinoa HOM05D005048 ORTHO05D006420 3.5e-163 578.9 500 60.0
Dinv36669 Davidia involucrata HOM05D005048 ORTHO05D006420 6.4e-157 558.1 364 75.8
MBI01_g38807_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 6.4e-157 558.1 414 68.6
CSS0046369 Camellia sinensis var. sinensis HOM05D005048 ORTHO05D006420 2.1e-152 543.1 373 71.6
Pp3c9_14820 Physcomitrium patens HOM05D005048 ORTHO05D006420 2.8e-152 542.7 460 61.7
Zm00001eb203380 Zea mays HOM05D005048 ORTHO05D006420 2.8e-152 542.7 398 68.3
Atru.chr7.1383 Acer truncatum HOM05D005048 ORTHO05D006420 1.8e-151 540.0 365 73.4
SMO361G0652 Selaginella moellendorffii HOM05D005048 ORTHO05D006420 3.4e-150 535.8 457 58.4
AT4G32360 Arabidopsis thaliana HOM05D005048 ORTHO05D006420 9.6e-145 517.7 354 72.0
CBR_g50003 Chara braunii HOM05D005048 ORTHO05D006420 1.3e-144 517.3 462 56.1
Solyc01g102490.3 Solanum lycopersicum HOM05D005048 ORTHO05D006420 4.0e-143 512.3 353 72.5
PSO210G5559 Papaver somniferum HOM05D005048 ORTHO05D006420 1.2e-142 510.8 372 69.1
Zm00001eb203400 Zea mays HOM05D005048 ORTHO05D006420 1.2e-142 510.8 372 68.8
MBI01_g29840_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 3.2e-140 502.7 482 59.8
Manes.14G158111 Manihot esculenta HOM05D005048 ORTHO05D006420 1.2e-139 500.7 333 74.5
Sc08g0007680 Simmondsia chinensis HOM05D005048 ORTHO05D006420 6.0e-139 498.4 336 73.2
Phvul.002G311600 Phaseolus vulgaris HOM05D005048 ORTHO05D006420 2.3e-138 496.5 333 75.7
DCAR_009632 Daucus carota HOM05D005048 ORTHO05D006420 1.3e-136 490.7 330 74.5
Sed0003567 Sechium edule HOM05D005048 ORTHO05D006420 3.1e-135 486.1 334 72.5
MD15G1191600 Malus domestica HOM05D005048 ORTHO05D006420 1.4e-127 460.7 324 71.3
FAN26G2936 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.3e-122 444.1 309 71.8
Cre13.g562550 Chlamydomonas reinhardtii HOM05D005048 ORTHO05D006420 7.6e-118 428.3 505 47.1
SHI02718 Sapria himalayana HOM05D005048 ORTHO05D006420 4.2e-116 422.5 315 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4229 Anthoceros agrestis HOM05D005048 ORTHO05D006420 3.3e-113 412.9 341 62.5
SEGI_35536 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 3.3e-113 412.9 339 63.4
Psat7g014800 Pisum sativum HOM05D005048 ORTHO05D006420 1.3e-112 411.0 297 71.7
CARHR240280 Cardamine hirsuta HOM05D005048 ORTHO05D006420 2.4e-111 406.8 316 65.5
Dinv41630 Davidia involucrata HOM05D005048 ORTHO05D006420 3.1e-111 406.4 248 80.2
Zm00001eb203390 Zea mays HOM05D005048 ORTHO05D006420 2.6e-110 403.3 298 69.1
MCO04G387 Micromonas commoda HOM05D005048 ORTHO05D006420 1.9e-108 397.1 479 46.6
Lj7C657T3 Lonicera japonica HOM05D005048 ORTHO05D006420 5.9e-94 349.0 205 82.0
Haze_26375 Corylus avellana HOM05D005048 ORTHO05D006420 5.7e-89 332.4 487 42.3
Oeu035980.2 Olea europaea HOM05D005048 ORTHO05D006420 1.9e-84 317.4 402 47.3
MBI01_g28841_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 6.8e-82 308.9 269 62.8
PRCOL_00004495 Prasinoderma coloniale HOM05D005048 ORTHO05D006420 5.7e-81 305.8 534 39.9
CDE05G1289 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 1.8e-79 300.8 255 56.9
Cfa027289 Carpinus fangiana HOM05D005048 ORTHO05D006420 1.4e-74 284.6 496 37.3
FvH4_1g05561 Fragaria vesca HOM05D005048 ORTHO05D006420 5.9e-70 269.2 323 47.1
FAN26G3268 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.0e-69 268.5 165 77.0
CARHR240270 Cardamine hirsuta HOM05D005048 ORTHO05D006420 1.3e-69 268.1 161 77.6
CDE05G1414 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 6.0e-54 216.1 416 35.3
MD15G1191500 Malus domestica HOM05D005048 ORTHO05D006420 1.1e-52 211.8 137 75.9
CDE05G2817 Ceratophyllum demersum HOM05D005048 ORTHO05D006420 5.1e-45 186.4 112 78.6
Duzib150G0221 Durio zibethinus HOM05D005048 ORTHO05D006420 2.1e-35 154.5 104 73.1
SHI02717 Sapria himalayana HOM05D005048 ORTHO05D012697 2.8e-35 154.1 150 56.0
Rhsim02G0216900 Rhododendron simsii HOM05D005048 ORTHO05D006420 4.7e-35 153.3 147 54.4
SGA_v2.0_scaffold29G12330 Striga asiatica HOM05D005048 ORTHO05D019217 1.2e-33 148.7 115 62.6
FvH4_1g05600 Fragaria vesca HOM05D005048 ORTHO05D006420 1.9e-31 141.4 173 53.2
AUR62010945 Chenopodium quinoa HOM05D005048 ORTHO05D006420 1.9e-28 131.3 79 73.4
Oeu035977.1 Olea europaea HOM05D005048 ORTHO05D006420 2.1e-27 127.9 141 48.2
Glyma.08G036802 Glycine max HOM05D005048 ORTHO05D006420 2.4e-23 114.4 66 81.8
AUR62007677 Chenopodium quinoa HOM05D000716 ORTHO05D008300 1.3e-16 92.0 57 70.2
FvH4_1g05551 Fragaria vesca HOM05D005048 ORTHO05D006420 1.7e-16 91.7 69 66.7
SGA_v2.0_scaffold7G04123 Striga asiatica HOM05D005048 ORTHO05D006420 2.2e-16 91.3 77 63.6
FAN28G0458 Fragaria x ananassa HOM05D005048 ORTHO05D006420 1.9e-15 88.2 76 53.9
SEGI_20206 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 1.2e-14 85.5 108 46.3
Lj7C657T4 Lonicera japonica HOM05D005048 ORTHO05D006420 4.6e-14 83.6 69 65.2
SEGI_37811 Sequoiadendron giganteum HOM05D005048 ORTHO05D012697 5.1e-13 80.1 182 32.4
SEGI_24932 Sequoiadendron giganteum HOM05D005048 ORTHO05D006420 4.3e-12 77.0 60 63.3
MBI14_g17788_MAGBIO Magnolia biondii HOM05D005048 ORTHO05D006420 2.1e-11 74.7 50 72.0
BraA03t10937Z Brassica rapa HOM05D005048 ORTHO05D028090 1.2e-09 68.9 108 36.1
Cc02_g01700 Coffea canephora HOM05D001433 ORTHO05D005019 2.0e-09 68.2 163 30.7
PSO063G5383 Papaver somniferum HOM05D001433 ORTHO05D005019 2.6e-09 67.8 163 30.7
PSO170G0996 Papaver somniferum HOM05D001433 ORTHO05D005019 2.6e-09 67.8 163 30.7
Cpa.g.sc12.33 Carica papaya HOM05D005048 ORTHO05D006420 3.4e-09 67.4 118 35.6
CiPaw.05G252100 Carya illinoinensis HOM05D001433 ORTHO05D005019 4.5e-09 67.0 164 31.1
SalBow4G0367 Salvia bowleyana HOM05D001433 ORTHO05D005019 4.5e-09 67.0 164 31.1
SalBow4G2448 Salvia bowleyana HOM05D001433 ORTHO05D005019 4.5e-09 67.0 164 31.1
FvH4_1g05581 Fragaria vesca HOM05D005048 ORTHO05D198222 5.8e-09 66.6 122 41.8
Os01g0681900 Oryza sativa ssp. japonica HOM05D001433 ORTHO05D005019 1.0e-08 65.9 188 29.8
TPR.G20023 Trifolium pratense HOM05D001433 ORTHO05D005019 1.0e-08 65.9 163 30.1
CBR_g18711 Chara braunii HOM05D001433 ORTHO05D005019 1.3e-08 65.5 117 35.9
ClCG05G008840 Citrullus lanatus HOM05D001433 ORTHO05D005019 1.7e-08 65.1 163 30.1
Lj3C907T3 Lonicera japonica HOM05D001433 ORTHO05D005019 2.2e-08 64.7 163 30.7
MELO3C008481.2 Cucumis melo HOM05D001433 ORTHO05D005019 2.9e-08 64.3 163 30.1
Rhsim03G0207200 Rhododendron simsii HOM05D001433 ORTHO05D005019 2.9e-08 64.3 163 31.9
Phvul.001G076400 Phaseolus vulgaris HOM05D001433 ORTHO05D005019 3.8e-08 63.9 163 29.4
Pp3c10_8200 Physcomitrium patens HOM05D001433 ORTHO05D005019 3.8e-08 63.9 163 28.2
Potri.012G011700 Populus trichocarpa HOM05D001433 ORTHO05D005019 6.5e-08 63.2 163 28.8
Lj1g0027622 Lotus japonicus HOM05D001433 ORTHO05D005019 8.4e-08 62.8 163 30.1
Nn3g19010 Nelumbo nucifera HOM05D001433 ORTHO05D005019 8.4e-08 62.8 163 28.2
A03p16480 Brassica napus HOM05D005048 ORTHO05D028090 1.4e-07 62.0 102 36.3
C03p19370 Brassica napus HOM05D005048 ORTHO05D028090 2.5e-07 61.2 104 40.4
BolC3t14323H Brassica oleracea HOM05D005048 ORTHO05D028090 2.5e-07 61.2 104 40.4
Cre13.g592200 Chlamydomonas reinhardtii HOM05D001433 ORTHO05D005019 2.5e-07 61.2 164 29.3
Pp3c14_8740 Physcomitrium patens HOM05D001433 ORTHO05D005019 3.2e-07 60.8 163 27.6
Lalb_Chr08g0240351 Lupinus albus HOM05D001433 ORTHO05D005019 5.5e-07 60.1 163 28.2
SMO302G0002 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.2e-06 58.9 163 28.8
SMO353G0329 Selaginella moellendorffii HOM05D001433 ORTHO05D005019 1.2e-06 58.9 163 28.8
SHI02382 Sapria himalayana HOM05D001433 ORTHO05D005019 2.1e-06 58.2 119 37.8


User provided reference genes

Program Settings