Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03793 Eucalyptus grandis HOM05D000357 ORTHO05D191311 8.2e-34 146.4 68 100.0
Eucgr.C03794 Eucalyptus grandis HOM05D000357 ORTHO05D000242 7.5e-11 70.1 42 71.4
Lj1g0000667 Lotus japonicus HOM05D000357 ORTHO05D000242 7.7e-08 60.1 38 63.2
Medtr1g100773 Medicago truncatula HOM05D000357 ORTHO05D000242 3.8e-07 57.8 33 72.7
CSS0043499 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 5.0e-07 57.4 54 51.9
Lj2g0003014 Lotus japonicus HOM05D000357 ORTHO05D000242 5.0e-07 57.4 42 57.1
TPR.G14335 Trifolium pratense HOM05D000357 ORTHO05D000242 6.6e-07 57.0 31 74.2
BcaNung05578 Brassica carinata HOM05D000357 ORTHO05D000242 8.6e-07 56.6 32 68.8
Glyma.09G156100 Glycine max HOM05D000357 ORTHO05D000242 1.1e-06 56.2 32 68.8
Sed0006482 Sechium edule HOM05D000357 ORTHO05D000242 1.1e-06 56.2 31 71.0
TPR.G6907 Trifolium pratense HOM05D000357 ORTHO05D000242 1.1e-06 56.2 31 71.0
BcaC02g09212 Brassica carinata HOM05D000357 ORTHO05D000242 1.5e-06 55.8 59 45.8
C04p40100 Brassica napus HOM05D000357 ORTHO05D000242 1.5e-06 55.8 59 45.8
BolC4t25586H Brassica oleracea HOM05D000357 ORTHO05D000242 1.5e-06 55.8 59 45.8
Potri.012G130100 Populus trichocarpa HOM05D000357 ORTHO05D000242 1.5e-06 55.8 41 56.1
Thecc.05G227200 Theobroma cacao HOM05D000357 ORTHO05D000242 1.9e-06 55.5 39 59.0
Atru.chr1.622 Acer truncatum HOM05D000357 ORTHO05D000242 2.5e-06 55.1 41 58.5
A04p06670 Brassica napus HOM05D000357 ORTHO05D000242 2.5e-06 55.1 59 45.8
BraA04t16371Z Brassica rapa HOM05D000357 ORTHO05D000242 2.5e-06 55.1 59 45.8
CSS0033138 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 2.5e-06 55.1 38 60.5
CSS0049180 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 2.5e-06 55.1 38 57.9
BcaC01g00207 Brassica carinata HOM05D000357 ORTHO05D000242 3.3e-06 54.7 32 65.6
A08p24300 Brassica napus HOM05D000357 ORTHO05D000242 3.3e-06 54.7 32 65.6
C03p76910 Brassica napus HOM05D000357 ORTHO05D000242 3.3e-06 54.7 32 65.6
BolC3t19946H Brassica oleracea HOM05D000357 ORTHO05D000242 3.3e-06 54.7 32 65.6
BraA08t34385Z Brassica rapa HOM05D000357 ORTHO05D000242 3.3e-06 54.7 32 65.6
BcaC08g44596 Brassica carinata HOM05D000357 ORTHO05D000242 4.2e-06 54.3 62 43.5
Potri.015G131500 Populus trichocarpa HOM05D000357 ORTHO05D000242 4.2e-06 54.3 50 48.0
Ah.04g161860 Amaranthus hybridus HOM05D000357 ORTHO05D000242 5.5e-06 53.9 41 58.5
COL.COLO4_14189 Corchorus olitorius HOM05D000357 ORTHO05D000242 5.5e-06 53.9 39 53.8
Medtr2g054650 Medicago truncatula HOM05D000357 ORTHO05D000242 5.5e-06 53.9 41 51.2
Atru.chr1.624 Acer truncatum HOM05D000357 ORTHO05D000242 7.2e-06 53.5 41 56.1
A07p21200 Brassica napus HOM05D000357 ORTHO05D000242 7.2e-06 53.5 62 43.5
C06p20690 Brassica napus HOM05D000357 ORTHO05D000242 7.2e-06 53.5 62 43.5
BolC6t37252H Brassica oleracea HOM05D000357 ORTHO05D000242 7.2e-06 53.5 62 43.5
BraA07t29807Z Brassica rapa HOM05D000357 ORTHO05D000242 7.2e-06 53.5 62 43.5
Carub.0005s1928 Capsella rubella HOM05D000357 ORTHO05D000242 7.2e-06 53.5 51 49.0
Glyma.16G206800 Glycine max HOM05D000357 ORTHO05D000242 7.2e-06 53.5 38 57.9
Psat0s2975g0160 Pisum sativum HOM05D000357 ORTHO05D000242 7.2e-06 53.5 38 55.3
Psat0s2975g0240 Pisum sativum HOM05D000357 ORTHO05D000242 7.2e-06 53.5 38 55.3
PGR004G2156 Punica granatum HOM05D000357 ORTHO05D000242 7.2e-06 53.5 33 63.6
Sp2g01660 Schrenkiella parvula HOM05D000357 ORTHO05D000242 7.2e-06 53.5 61 41.0
SGA_v2.0_scaffold42G16115 Striga asiatica HOM05D000357 ORTHO05D000242 7.2e-06 53.5 55 50.9
Aa31LG5G21470 Aethionema arabicum HOM05D000357 ORTHO05D000242 9.5e-06 53.1 69 42.0
AT2G36320 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 9.5e-06 53.1 61 41.0
A03p53810 Brassica napus HOM05D000357 ORTHO05D000242 9.5e-06 53.1 56 42.9
BraA03t14448Z Brassica rapa HOM05D000357 ORTHO05D000242 9.5e-06 53.1 56 42.9
FvH4_5g21790 Fragaria vesca HOM05D000357 ORTHO05D000242 9.5e-06 53.1 29 72.4
FAN08G0722 Fragaria x ananassa HOM05D000357 ORTHO05D000242 9.5e-06 53.1 29 72.4
Medtr7g114920 Medicago truncatula HOM05D000357 ORTHO05D000242 9.5e-06 53.1 33 63.6


User provided reference genes

Program Settings