Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.4e-190 669.5 335 100.0
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.6e-128 462.6 288 80.9
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 1.5e-88 330.5 286 58.4
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.4e-86 323.9 292 57.9
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 7.0e-86 321.6 286 59.1
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 9.2e-86 321.2 284 58.5
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 4.6e-85 318.9 291 59.1
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 1.7e-84 317.0 290 59.3
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 5.0e-84 315.5 292 56.2
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 2.8e-82 309.7 294 56.1
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 8.0e-82 308.1 323 52.9
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 4.0e-81 305.8 321 52.3
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 5.2e-81 305.4 285 57.5
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 5.2e-81 305.4 181 82.9
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 9.8e-80 301.2 316 51.3
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 1.1e-78 297.7 285 56.5
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.4e-78 297.4 292 57.2
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.2e-77 294.3 292 56.8
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 1.6e-77 293.9 289 56.1
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 2.0e-77 293.5 289 53.6
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 2.3e-76 290.0 342 49.7
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 3.0e-76 289.7 285 52.6
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 3.0e-76 289.7 283 53.0
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 3.0e-76 289.7 285 53.3
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 1.5e-75 287.3 286 55.2
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 3.3e-75 286.2 280 52.9
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 5.6e-75 285.4 303 53.5
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.2e-74 284.3 287 54.7
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 2.1e-74 283.5 280 53.2
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 2.8e-74 283.1 293 53.2
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 4.7e-74 282.3 289 52.9
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 1.4e-73 280.8 287 50.9
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 5.2e-73 278.9 323 48.0
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 6.8e-73 278.5 287 50.2
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 6.8e-73 278.5 287 50.5
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.5e-72 277.3 289 51.9
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 2.6e-72 276.6 280 52.9
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 2.6e-72 276.6 281 54.4
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 4.4e-72 275.8 281 53.4
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 7.5e-72 275.0 286 53.5
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 7.5e-72 275.0 287 51.6
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 7.5e-72 275.0 280 52.9
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 9.9e-72 274.6 290 49.0
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 1.3e-71 274.2 286 52.8
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 1.3e-71 274.2 289 51.6
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 2.9e-71 273.1 288 54.2
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 4.9e-71 272.3 295 51.2
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 2.4e-70 270.0 289 50.2
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 3.2e-70 269.6 279 54.1
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 4.1e-70 269.2 289 49.8
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 7.1e-70 268.5 285 53.3
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 1.6e-69 267.3 302 49.0
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 3.5e-69 266.2 285 52.6
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 7.8e-69 265.0 282 53.5
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 1.0e-68 264.6 286 51.0
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 2.3e-68 263.5 286 49.7
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 3.0e-68 263.1 279 51.3
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 6.6e-68 261.9 283 50.2
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 6.6e-68 261.9 284 53.9
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 8.6e-68 261.5 289 48.8
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 1.9e-67 260.4 287 51.2
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 5.6e-67 258.8 289 47.8
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 5.6e-67 258.8 283 50.9
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 9.5e-67 258.1 286 49.7
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 9.5e-67 258.1 286 50.0
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 6.2e-66 255.4 280 50.7
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 8.1e-66 255.0 289 50.2
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 1.4e-65 254.2 280 51.8
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 1.8e-65 253.8 286 49.7
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 3.1e-65 253.1 292 48.6
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 3.1e-65 253.1 296 47.6
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 4.0e-65 252.7 286 48.3
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 5.2e-65 252.3 293 49.1
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.5e-64 250.8 286 49.0
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 1.5e-64 250.8 277 51.3
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-63 247.7 296 48.0
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 2.9e-63 246.5 300 48.0
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 8.4e-63 245.0 299 45.5
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 1.4e-62 244.2 299 46.2
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 1.4e-62 244.2 311 45.7
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 2.4e-62 243.4 299 45.2
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 1.2e-61 241.1 303 44.9
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 1.6e-61 240.7 308 46.8
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 7.8e-61 238.4 235 50.6
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 3.9e-60 236.1 295 45.1
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 1.1e-59 234.6 283 45.6
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 1.5e-59 234.2 286 47.9
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 7.3e-59 231.9 255 49.0
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 9.6e-59 231.5 285 45.6
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.1e-57 228.0 205 64.9
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.1e-57 228.0 288 44.1
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 1.5e-56 224.2 333 43.5
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 3.4e-56 223.0 284 44.4
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 1.7e-55 220.7 283 43.1
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 1.7e-55 220.7 263 49.0
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 2.9e-55 219.9 171 64.9
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.8e-55 219.5 130 85.4
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 6.4e-55 218.8 292 44.9
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 2.1e-53 213.8 223 50.7
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 3.9e-52 209.5 311 40.8
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 6.6e-52 208.8 220 51.4
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 5.6e-51 205.7 282 45.0
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 3.1e-49 199.9 296 46.3
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 5.3e-49 199.1 306 43.1
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 8.4e-47 191.8 215 50.2
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 1.9e-46 190.7 210 50.5
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.2e-45 188.0 370 35.4
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 2.3e-36 157.1 181 47.0
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 5.3e-33 146.0 295 34.9
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 8.4e-31 138.7 287 34.8
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 7.4e-27 125.6 237 39.2
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 8.2e-26 122.1 280 33.2
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 5.0e-23 112.8 98 59.2
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 7.2e-22 109.0 268 32.5
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 1.6e-21 107.8 293 33.1
C06p46160 Brassica napus HOM05D005563 ORTHO05D006667 3.3e-19 100.1 192 37.0
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 6.3e-18 95.9 134 43.3
Thecc.10G189600 Theobroma cacao HOM05D005563 ORTHO05D006667 7.7e-16 89.0 104 48.1
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.9e-14 84.3 151 33.8
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 2.7e-13 80.5 237 27.4
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.1e-11 75.1 150 38.0
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 4.4e-11 73.2 184 28.8
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 2.4e-09 67.4 145 33.8
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 9.1e-09 65.5 114 34.2
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 7.7e-08 62.4 131 34.4
MCO11G544 Micromonas commoda HOM05D005563 ORTHO05D006667 1.3e-07 61.6 245 24.1
SHI17433 Sapria himalayana HOM05D005563 ORTHO05D006667 2.9e-07 60.5 60 46.7


User provided reference genes

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