Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.5e-106 388.3 194 100.0
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.4e-78 296.6 233 67.4
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-71 272.7 232 65.1
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-71 272.7 232 65.1
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.8e-71 271.6 232 64.2
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.4e-70 270.0 230 63.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.1e-70 267.3 238 63.0
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 3.8e-68 261.9 217 63.1
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 3.2e-67 258.8 234 59.8
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 9.4e-67 257.3 236 59.7
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 9.4e-67 257.3 236 59.7
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.6e-66 256.5 232 59.5
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-65 253.4 234 59.0
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 1.4e-65 253.4 231 60.2
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-65 252.3 233 61.4
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-65 252.3 233 61.4
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-65 252.3 233 61.4
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-65 252.3 233 61.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 2.8e-63 245.7 233 58.8
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.8e-63 245.0 234 58.1
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.8e-63 245.0 234 58.1
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-62 243.4 230 59.1
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-62 243.4 230 59.1
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-62 243.4 230 59.1
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-62 243.4 230 59.1
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.4e-62 243.4 230 59.1
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 2.0e-61 239.6 226 60.6
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.3e-60 236.9 236 58.1
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 3.8e-60 235.3 231 56.7
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.5e-60 234.6 232 58.6
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 2.5e-59 232.6 236 55.5
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 2.5e-59 232.6 236 55.5
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 5.5e-59 231.5 236 55.1
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 7.2e-59 231.1 236 55.1
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 2.7e-58 229.2 236 54.2
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 2.7e-58 229.2 236 54.2
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 2.7e-58 229.2 236 54.2
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 2.7e-58 229.2 236 54.2
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 2.7e-58 229.2 236 54.2
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 6.1e-58 228.0 242 54.5
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-56 223.4 214 59.3
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.4e-54 216.9 233 55.4
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 2.4e-54 216.1 232 53.0
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 3.5e-53 212.2 187 61.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.8e-50 202.6 193 57.5
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-49 200.7 198 59.1
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.8e-49 199.9 124 79.8
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 2.6e-48 196.1 197 55.3
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.8e-48 194.1 192 53.6
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.8e-48 194.1 192 53.6
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.8e-48 194.1 192 53.6
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.8e-48 194.1 192 53.6
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 9.8e-48 194.1 192 53.6
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 8.6e-44 181.0 230 49.1
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-42 174.5 125 72.0
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-42 174.5 125 72.0
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 8.0e-42 174.5 125 72.0
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.4e-41 173.7 187 52.4
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 6.8e-41 171.4 125 70.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.2e-39 166.4 130 66.2
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-39 165.2 188 52.1
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.6e-37 160.2 175 52.0
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.0e-37 159.8 109 71.6
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.8e-37 157.9 170 55.3
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.0e-36 157.5 193 46.6
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 6.4e-31 138.3 125 62.4
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.4e-30 137.1 100 68.0
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.4e-30 136.3 82 78.0
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.1e-30 135.6 82 78.0
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 4.1e-30 135.6 129 58.9
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 7.1e-30 134.8 69 88.4
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.2e-29 134.0 115 61.7
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.2e-29 134.0 99 67.7
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.0e-28 131.0 164 48.2
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.3e-28 130.6 163 47.2
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.1e-27 127.5 70 82.9
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.1e-27 127.5 86 68.6
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 2.5e-27 126.3 177 49.7
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 3.3e-27 125.9 154 52.6
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.3e-27 125.6 96 65.6
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 7.3e-27 124.8 102 68.6
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.5e-27 124.4 62 88.7
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 8.9e-25 117.9 162 46.9
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.2e-24 117.5 166 46.4
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-24 117.5 118 57.6
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.0e-24 116.7 61 85.2
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.0e-24 116.7 125 53.6
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.7e-23 113.6 61 83.6
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.7e-23 113.6 79 65.8
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 2.2e-23 113.2 245 31.4
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.9e-23 112.8 67 77.6
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 4.9e-23 112.1 260 31.5
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-22 110.2 137 49.6
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 3.2e-22 109.4 164 43.9
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.2e-21 107.5 105 57.1
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.6e-21 105.5 48 95.8
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 4.6e-21 105.5 48 95.8
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.7e-20 103.6 134 46.3
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 7.3e-19 98.2 59 81.4
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 4.7e-18 95.5 136 43.4
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 6.2e-18 95.1 51 86.3
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 8.1e-18 94.7 61 70.5
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.1e-17 92.8 64 67.2
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 4.0e-17 92.4 132 43.9
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-16 90.9 47 91.5
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.0e-16 90.1 38 97.4
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.6e-16 89.7 106 51.9
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.3e-15 87.4 128 45.3
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 8.4e-15 84.7 76 61.8
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.1e-14 84.3 51 72.5
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-14 83.6 115 44.3
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 9.3e-14 81.3 34 94.1
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.5e-13 79.3 34 91.2
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.0e-12 77.8 77 58.4
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 1.7e-12 77.0 54 64.8
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 6.6e-12 75.1 235 31.9
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 9.6e-11 71.2 31 90.3
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 4.8e-10 68.9 64 53.1
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.2e-08 64.3 72 58.3
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.9e-08 61.2 72 51.4
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.2e-06 55.8 68 50.0
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 5.4e-06 55.5 23 91.3


User provided reference genes

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