Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03478 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.1e-143 512.3 251 100.0
Eucgr.C03636 Eucalyptus grandis HOM05D005563 ORTHO05D006667 9.6e-88 327.4 176 92.6
Eucgr.C03620 Eucalyptus grandis HOM05D005563 ORTHO05D006667 1.3e-81 307.0 181 82.9
Eucgr.G00337 Eucalyptus grandis HOM05D005563 ORTHO05D006667 3.1e-78 295.8 212 72.6
Prupe.8G002700 Prunus persica HOM05D005563 ORTHO05D006667 5.1e-49 198.7 232 47.8
Cfa007306 Carpinus fangiana HOM05D005563 ORTHO05D006667 3.3e-48 196.1 233 49.8
GSVIVG01037139001 Vitis vinifera HOM05D005563 ORTHO05D006667 1.1e-46 191.0 241 46.1
MD10G1001500 Malus domestica HOM05D005563 ORTHO05D006667 3.1e-46 189.5 219 50.2
Haze_14007 Corylus avellana HOM05D005563 ORTHO05D006667 5.3e-46 188.7 233 47.6
Dinv22054 Davidia involucrata HOM05D005563 ORTHO05D006667 5.3e-46 188.7 219 49.3
Thecc.05G149300 Theobroma cacao HOM05D005563 ORTHO05D006667 1.6e-45 187.2 181 55.2
RcHm_v2.0_Chr6g0249561 Rosa chinensis HOM05D005563 ORTHO05D006667 2.6e-45 186.4 228 47.4
PGR044G0823 Punica granatum HOM05D005563 ORTHO05D006667 1.7e-44 183.7 217 51.2
QL09p001227 Quercus lobata HOM05D005563 ORTHO05D006667 1.7e-44 183.7 220 47.7
FvH4_2g00270 Fragaria vesca HOM05D005563 ORTHO05D006667 2.2e-44 183.3 212 48.1
Lalb_Chr24g0393341 Lupinus albus HOM05D005563 ORTHO05D006667 3.8e-44 182.6 250 45.6
Duzib177G0343 Durio zibethinus HOM05D005563 ORTHO05D006667 6.5e-44 181.8 227 46.7
COL.COLO4_34067 Corchorus olitorius HOM05D005563 ORTHO05D006667 8.5e-44 181.4 206 49.0
Nitab4.5_0000079g0140 Nicotiana tabacum HOM05D005563 ORTHO05D006667 1.1e-43 181.0 205 48.3
Glyma.13G312100 Glycine max HOM05D005563 ORTHO05D006667 1.9e-43 180.3 225 47.6
TAR628G0232 Trochodendron aralioides HOM05D005563 ORTHO05D006667 3.2e-43 179.5 226 48.7
TAR633G2728 Trochodendron aralioides HOM05D005563 ORTHO05D006667 3.2e-43 179.5 226 47.8
Sabra13G0080900 Salix brachista HOM05D005563 ORTHO05D006667 7.2e-43 178.3 213 46.5
Nitab4.5_0001489g0080 Nicotiana tabacum HOM05D005563 ORTHO05D006667 9.4e-43 177.9 203 49.3
CiPaw.04G008700 Carya illinoinensis HOM05D005563 ORTHO05D006667 1.2e-42 177.6 215 49.8
Nitab4.5_0006591g0020 Nicotiana tabacum HOM05D005563 ORTHO05D006667 2.1e-42 176.8 203 48.8
VMungo1080G1448 Vigna mungo HOM05D005563 ORTHO05D006667 3.6e-42 176.0 266 42.9
Potri.013G094800 Populus trichocarpa HOM05D005563 ORTHO05D006667 4.7e-42 175.6 217 48.4
arahy.Tifrunner.gnm1.ann1.QV839S Arachis hypogaea HOM05D005563 ORTHO05D006667 6.1e-42 175.3 253 45.1
Cc02_g22680 Coffea canephora HOM05D005563 ORTHO05D006667 8.0e-42 174.9 219 46.1
Lj3g0011209 Lotus japonicus HOM05D005563 ORTHO05D006667 5.2e-41 172.2 226 45.6
CSS0040007 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 1.1e-40 171.0 249 42.6
CANSAT64G1925 Cannabis sativa HOM05D005563 ORTHO05D006667 1.1e-40 171.0 238 45.0
Peaxi162Scf00078g01133 Petunia axillaris HOM05D005563 ORTHO05D006667 1.1e-40 171.0 204 48.5
Phvul.005G118600 Phaseolus vulgaris HOM05D005563 ORTHO05D006667 1.5e-40 170.6 220 46.4
Gorai.009G262600 Gossypium raimondii HOM05D005563 ORTHO05D006667 2.0e-40 170.2 226 44.2
Actinidia29363 Actinidia chinensis HOM05D005563 ORTHO05D006667 7.5e-40 168.3 218 47.2
CSS0002080 Camellia sinensis var. sinensis HOM05D005563 ORTHO05D006667 9.7e-40 167.9 249 41.8
Gohir.A05G248000 Gossypium hirsutum HOM05D005563 ORTHO05D006667 9.7e-40 167.9 213 45.1
MELO3C022956.2 Cucumis melo HOM05D005563 ORTHO05D006667 1.7e-39 167.2 232 44.8
Gohir.D05G248801 Gossypium hirsutum HOM05D005563 ORTHO05D006667 2.8e-39 166.4 213 45.1
Oeu019017.1 Olea europaea HOM05D005563 ORTHO05D006667 3.7e-39 166.0 271 41.3
DCAR_027509 Daucus carota HOM05D005563 ORTHO05D006667 4.8e-39 165.6 239 41.8
FAN24G3564 Fragaria x ananassa HOM05D005563 ORTHO05D006667 6.3e-39 165.2 231 42.9
TPR.G23443 Trifolium pratense HOM05D005563 ORTHO05D006667 6.3e-39 165.2 214 47.2
vmacro07741 Vaccinium macrocarpon HOM05D005563 ORTHO05D006667 8.2e-39 164.9 245 43.3
Oeu009445.1 Olea europaea HOM05D005563 ORTHO05D006667 1.4e-38 164.1 268 41.8
Ciclev10020232m.g Citrus clementina HOM05D005563 ORTHO05D006667 1.8e-38 163.7 261 40.2
MBI14_g08074_MAGBIO Magnolia biondii HOM05D005563 ORTHO05D006667 3.1e-38 162.9 247 42.9
DCAR_001180 Daucus carota HOM05D005563 ORTHO05D006667 4.1e-38 162.5 206 47.6
DCAR_010113 Daucus carota HOM05D005563 ORTHO05D006667 5.3e-38 162.2 181 50.3
Sed0012109 Sechium edule HOM05D005563 ORTHO05D006667 7.0e-38 161.8 216 44.9
Solyc03g026100.1 Solanum lycopersicum HOM05D005563 ORTHO05D006667 9.1e-38 161.4 201 48.3
CAN.G587.23 Capsicum annuum HOM05D005563 ORTHO05D006667 1.2e-37 161.0 202 47.0
Migut.G00338 Erythranthe guttata HOM05D005563 ORTHO05D006667 1.2e-37 161.0 212 46.2
Manes.18G108800 Manihot esculenta HOM05D005563 ORTHO05D006667 1.2e-37 161.0 260 41.9
Atru.chr13.2584 Acer truncatum HOM05D005563 ORTHO05D006667 1.6e-37 160.6 195 47.2
Psat7g014680 Pisum sativum HOM05D005563 ORTHO05D006667 2.7e-37 159.8 207 46.4
Rhsim01G0059200 Rhododendron simsii HOM05D005563 ORTHO05D006667 2.7e-37 159.8 263 42.2
TPR.G11352 Trifolium pratense HOM05D005563 ORTHO05D006667 2.7e-37 159.8 196 47.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 5.9e-37 158.7 255 41.6
HanXRQChr15g0488461 Helianthus annuus HOM05D005563 ORTHO05D006667 5.9e-37 158.7 219 46.1
Rhsim01G0058900 Rhododendron simsii HOM05D005563 ORTHO05D006667 5.9e-37 158.7 263 42.2
CsaV3_6G042510 Cucumis sativus L. HOM05D005563 ORTHO05D006667 7.7e-37 158.3 232 42.2
Medtr8g103020 Medicago truncatula HOM05D005563 ORTHO05D006667 1.0e-36 157.9 213 46.0
Sopen03g004940 Solanum pennellii HOM05D005563 ORTHO05D006667 1.0e-36 157.9 210 47.6
ClCG11G000440 Citrullus lanatus HOM05D005563 ORTHO05D006667 3.8e-36 156.0 220 42.7
CAN.G769.9 Capsicum annuum HOM05D005563 ORTHO05D006667 1.5e-35 154.1 202 46.5
PGSC0003DMG400014277 Solanum tuberosum HOM05D005563 ORTHO05D006667 1.2e-34 151.0 203 45.8
Aqoxy1G00244 Aquilegia oxysepala HOM05D005563 ORTHO05D006667 1.6e-34 150.6 228 39.9
Sc19g0006900 Simmondsia chinensis HOM05D005563 ORTHO05D006667 2.1e-34 150.2 223 42.6
Nn5g27214 Nelumbo nucifera HOM05D005563 ORTHO05D006667 4.7e-34 149.1 214 43.0
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 4.7e-34 149.1 213 44.1
BcaC08g45784 Brassica carinata HOM05D005563 ORTHO05D006667 8.0e-34 148.3 230 41.7
PSO761G0451 Papaver somniferum HOM05D005563 ORTHO05D006667 1.0e-33 147.9 230 42.6
Thhalv10018623m.g Eutrema salsugineum HOM05D005563 ORTHO05D006667 2.3e-33 146.7 222 39.2
SGA_v2.0_scaffold277G46672 Striga asiatica HOM05D005563 ORTHO05D006667 4.0e-33 146.0 182 46.2
C06p35680 Brassica napus HOM05D005563 ORTHO05D006667 5.2e-33 145.6 232 41.8
BolC6t38691H Brassica oleracea HOM05D005563 ORTHO05D006667 5.2e-33 145.6 232 41.8
BraA07t30715Z Brassica rapa HOM05D005563 ORTHO05D006667 1.5e-32 144.1 221 43.9
Aa31LG4G9220 Aethionema arabicum HOM05D005563 ORTHO05D006667 2.0e-32 143.7 223 40.4
A07p30780 Brassica napus HOM05D005563 ORTHO05D006667 3.4e-32 142.9 221 43.0
BcaB03g14889 Brassica carinata HOM05D005563 ORTHO05D006667 4.4e-32 142.5 221 42.1
BcaB03g15600 Brassica carinata HOM05D005563 ORTHO05D006667 1.3e-31 141.0 221 42.5
AUR62037990 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.7e-31 140.6 165 47.9
THA.LOC104825030 Tarenaya hassleriana HOM05D005563 ORTHO05D006667 2.8e-31 139.8 223 40.8
AT5G24670 Arabidopsis thaliana HOM05D005563 ORTHO05D006667 6.3e-31 138.7 182 44.5
AL2G30920 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 1.1e-30 137.9 182 44.5
Lsat_1_v5_gn_4_170241 Lactuca sativa HOM05D005563 ORTHO05D006667 1.4e-30 137.5 225 38.2
PSO017G5640 Papaver somniferum HOM05D005563 ORTHO05D006667 1.4e-30 137.5 179 44.7
Hund26934 Selenicereus undatus HOM05D005563 ORTHO05D006667 1.4e-30 137.5 216 41.2
PSO407G0243 Papaver somniferum HOM05D005563 ORTHO05D006667 2.4e-30 136.7 179 44.1
Sp5g26490 Schrenkiella parvula HOM05D005563 ORTHO05D006667 2.4e-30 136.7 193 42.5
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 3.1e-30 136.3 189 43.9
Carub.0002s1819 Capsella rubella HOM05D005563 ORTHO05D006667 4.1e-30 136.0 206 42.2
FAN19G1429 Fragaria x ananassa HOM05D005563 ORTHO05D006667 4.1e-30 136.0 189 42.9
PSO170G2533 Papaver somniferum HOM05D005563 ORTHO05D006667 5.4e-30 135.6 208 39.4
Carub.0004s0662 Capsella rubella HOM05D005563 ORTHO05D006667 9.1e-30 134.8 182 45.1
AL1G12770 Arabidopsis lyrata HOM05D005563 ORTHO05D006667 2.0e-29 133.7 182 44.0
AUR62023340 Chenopodium quinoa HOM05D005563 ORTHO05D006667 1.7e-28 130.6 172 47.1
Eucgr.L00998 Eucalyptus grandis HOM05D005563 ORTHO05D006667 2.2e-28 130.2 69 95.7
CARHR064610 Cardamine hirsuta HOM05D005563 ORTHO05D006667 6.5e-28 128.6 191 42.9
ATR0580G344 Amborella trichopoda HOM05D005563 ORTHO05D006667 3.2e-27 126.3 232 38.4
AUR62013814 Chenopodium quinoa HOM05D005563 ORTHO05D006667 4.2e-27 125.9 167 46.7
Ca_17321_v3 Cicer arietinum L. HOM05D005563 ORTHO05D006667 1.6e-26 124.0 178 45.5
TWI18G0160 Tripterygium wilfordii HOM05D005563 ORTHO05D006667 1.6e-26 124.0 187 42.8
arahy.Tifrunner.gnm1.ann1.NB4SND Arachis hypogaea HOM05D005563 ORTHO05D006667 6.1e-26 122.1 181 44.2
Actinidia03534 Actinidia chinensis HOM05D005563 ORTHO05D006667 2.8e-23 113.2 99 60.6
EL10Ac1g00691 Beta vulgaris HOM05D005563 ORTHO05D006667 4.3e-19 99.4 156 42.9
DCAR_001179 Daucus carota HOM05D005563 ORTHO05D006667 6.1e-18 95.5 180 38.9
Cpa.g.sc249.8 Carica papaya HOM05D005563 ORTHO05D006667 2.3e-17 93.6 61 70.5
SHI17431 Sapria himalayana HOM05D005563 ORTHO05D006667 1.5e-16 90.9 164 36.0
BolC6t39597H Brassica oleracea HOM05D005563 ORTHO05D006667 7.5e-16 88.6 154 40.9
SMO356G0078 Selaginella moellendorffii HOM05D005563 ORTHO05D006667 2.2e-15 87.0 189 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1216 Anthoceros agrestis HOM05D005563 ORTHO05D006667 1.2e-13 81.3 242 31.0
CDE04G2046 Ceratophyllum demersum HOM05D005563 ORTHO05D006667 1.0e-12 78.2 174 33.9
Thecc.10G189700 Theobroma cacao HOM05D005563 ORTHO05D006667 1.9e-11 73.9 114 37.7
HPP92_009712 Vanilla planifolia HOM05D005563 ORTHO05D006667 1.6e-10 70.9 177 33.3
Mapoly0019s0003 Marchantia polymorpha HOM05D005563 ORTHO05D006667 8.9e-09 65.1 205 32.7
Zm00001eb088860 Zea mays HOM05D005563 ORTHO05D006667 1.2e-08 64.7 178 32.0
CBR_g8323 Chara braunii HOM05D005563 ORTHO05D006667 7.5e-08 62.0 140 33.6
Pp3c5_5220 Physcomitrium patens HOM05D005563 ORTHO05D006667 2.9e-07 60.1 179 32.4
CBR_g50242 Chara braunii HOM05D005563 ORTHO05D006667 3.7e-07 59.7 121 34.7
Haze_14787 Corylus avellana HOM05D005563 ORTHO05D006667 7.0e-06 55.5 88 39.8


User provided reference genes

Program Settings