Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 2.4e-252 875.2 478 100.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 6.3e-173 611.3 355 82.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.4e-172 609.4 355 81.7
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.1e-169 600.5 355 80.6
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.1e-169 600.5 359 79.9
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 3.3e-169 599.0 361 79.8
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.1e-168 596.3 353 80.7
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.1e-168 596.3 353 80.7
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.7e-168 595.1 352 81.0
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 6.1e-168 594.7 352 80.4
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.0e-167 592.4 352 81.2
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.8e-167 591.3 361 80.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.5e-166 590.1 355 79.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.5e-166 590.1 357 79.8
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.6e-166 589.3 431 69.6
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.7e-166 588.2 357 77.6
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 5.7e-166 588.2 471 65.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 7.5e-166 587.8 357 79.3
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 7.5e-166 587.8 355 80.8
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.3e-165 587.0 458 67.5
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.2e-165 586.3 355 79.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 3.7e-165 585.5 430 68.6
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 6.4e-165 584.7 360 77.2
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.8e-164 583.2 357 77.6
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 3.2e-164 582.4 355 78.3
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 3.2e-164 582.4 352 77.8
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 9.2e-164 580.9 461 64.2
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.2e-163 580.5 355 79.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.6e-163 580.1 352 78.4
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.0e-163 579.7 355 79.4
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 4.6e-163 578.6 381 75.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.9e-163 578.2 353 79.0
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 5.9e-163 578.2 466 64.2
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 7.8e-163 577.8 355 78.0
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.3e-162 577.0 359 77.2
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.3e-162 577.0 353 77.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 1.7e-162 576.6 428 69.2
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 3.0e-162 575.9 352 77.6
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 3.0e-162 575.9 355 78.3
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 8.6e-162 574.3 355 78.0
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.1e-161 573.9 458 64.8
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 5.6e-161 571.6 353 78.8
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 2.1e-160 569.7 352 76.4
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.1e-160 569.7 352 79.3
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 2.8e-160 569.3 352 77.6
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.7e-160 568.5 426 67.1
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.2e-160 568.2 358 76.0
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 2.3e-159 566.2 439 67.7
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 4.4e-158 562.0 358 74.3
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 5.8e-158 561.6 441 66.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 9.8e-158 560.8 352 77.6
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-157 560.1 362 74.6
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.9e-157 559.3 355 77.5
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 3.7e-157 558.9 354 75.4
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.4e-156 557.0 357 74.2
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-156 557.0 458 62.9
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.9e-156 556.6 326 80.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 2.4e-156 556.2 436 65.8
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.4e-156 556.2 423 66.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 3.2e-156 555.8 352 75.3
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 3.2e-156 555.8 458 62.9
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 4.1e-156 555.4 355 74.9
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 7.0e-156 554.7 357 74.5
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.2e-156 554.3 352 75.0
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 9.2e-156 554.3 354 77.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 2.0e-155 553.1 367 73.8
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.0e-155 553.1 352 75.9
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 4.6e-155 552.0 356 75.0
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.6e-155 552.0 352 75.9
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 6.0e-155 551.6 352 75.9
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 7.8e-155 551.2 355 74.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 7.8e-155 551.2 352 74.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 7.8e-155 551.2 361 73.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.7e-154 550.1 335 76.7
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.7e-154 550.1 435 66.4
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 2.3e-154 549.7 358 74.9
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 5.0e-154 548.5 357 72.5
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.5e-153 547.0 358 74.3
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 2.5e-153 546.2 360 74.2
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 7.3e-153 544.7 360 73.3
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 7.3e-153 544.7 360 73.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 9.5e-153 544.3 350 72.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.2e-152 543.9 362 74.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.6e-152 543.5 352 74.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.6e-152 543.5 352 74.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.6e-152 543.5 352 74.7
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 2.1e-152 543.1 367 71.9
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.6e-152 542.3 358 73.5
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.6e-152 542.3 358 73.5
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-152 542.0 364 72.5
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-152 542.0 358 72.9
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 4.7e-152 542.0 358 72.9
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 4.7e-152 542.0 364 72.5
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 4.0e-151 538.9 352 74.1
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.5e-150 537.0 358 72.9
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.0e-150 536.6 470 63.0
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 5.8e-150 535.0 361 74.5
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.8e-150 535.0 466 60.1
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 6.4e-149 531.6 359 70.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 8.3e-149 531.2 358 74.3
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.9e-148 530.0 352 73.3
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.9e-148 530.0 317 81.7
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.4e-148 529.6 310 81.9
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 5.4e-148 528.5 312 82.1
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-147 526.6 404 66.6
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.7e-147 526.2 473 60.5
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.5e-147 525.8 435 64.8
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.0e-147 525.0 435 63.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.7e-146 523.5 435 64.6
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.3e-146 523.1 316 81.3
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 1.2e-144 517.3 420 63.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 6.2e-144 515.0 349 70.5
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 8.1e-144 514.6 356 72.5
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.1e-143 514.2 349 71.6
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.2e-142 510.8 446 62.8
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.2e-142 510.8 352 73.3
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.4e-142 508.8 435 63.7
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 5.8e-142 508.4 327 75.2
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.1e-140 504.2 351 72.4
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 9.2e-140 501.1 320 75.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-139 500.4 349 67.3
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.7e-138 496.9 352 67.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.6e-138 495.0 380 67.6
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 4.3e-137 492.3 355 66.8
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 4.0e-135 485.7 350 67.7
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.0e-134 483.4 432 59.7
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 9.9e-134 481.1 340 70.9
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 3.8e-133 479.2 300 75.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.9e-132 476.9 359 66.6
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.2e-132 476.1 357 64.4
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 4.2e-132 475.7 369 62.9
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.8e-127 460.3 360 62.5
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 5.3e-127 458.8 300 76.0
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 9.0e-127 458.0 357 62.7
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 4.9e-125 452.2 351 65.0
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.1e-124 451.1 300 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.2e-124 449.5 371 60.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.2e-124 449.1 387 63.8
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-123 446.8 310 71.0
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 2.7e-123 446.4 365 61.9
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 5.1e-122 442.2 445 57.5
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 1.6e-120 437.2 300 70.7
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 5.3e-119 432.2 334 63.2
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.0e-118 430.3 331 67.7
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.4e-118 429.5 287 73.9
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 9.6e-113 411.4 461 51.2
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 9.0e-111 404.8 358 59.2
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.9e-103 378.6 213 82.2
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 2.0e-102 377.1 379 55.7
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.9e-76 290.8 205 71.7
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.2e-76 289.7 282 56.0
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.2e-70 271.6 168 77.4
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 4.5e-70 269.6 239 63.2
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.8e-69 266.5 355 43.4
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 6.1e-67 259.2 157 79.0
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.2e-54 218.4 134 82.1
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 6.2e-43 179.5 329 33.7
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.9e-36 157.9 386 31.6
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.1e-31 142.1 94 63.8
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.3e-29 134.4 108 58.3
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.6e-29 132.9 73 78.1
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.7e-19 100.1 360 27.5
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 4.7e-19 100.1 49 89.8
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 5.8e-17 93.2 126 49.2
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 4.2e-15 87.0 174 30.5
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 9.3e-15 85.9 138 37.0
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.2e-09 68.9 65 49.2
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.1e-07 62.4 42 66.7
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 5.4e-07 60.1 40 67.5


User provided reference genes

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