Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-109 399.4 188 100.0
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-108 396.4 188 99.5
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-105 386.3 188 96.3
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-105 386.0 188 96.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.2e-104 380.6 183 97.3
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.2e-100 369.0 185 91.9
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-91 339.7 167 96.4
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 4.5e-90 334.7 183 83.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.3e-89 333.2 201 78.1
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 82.1
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.4e-88 329.7 185 79.5
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.9e-88 329.3 185 80.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 5.5e-88 327.8 182 81.3
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 5.5e-88 327.8 183 79.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.2e-87 326.6 182 79.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.6e-87 326.2 182 81.3
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 3.6e-87 325.1 186 77.4
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 3.6e-87 325.1 186 77.4
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.6e-87 325.1 188 77.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 4.7e-87 324.7 185 80.5
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 4.7e-87 324.7 185 77.3
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.4e-86 323.2 179 81.6
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.8e-86 322.8 179 79.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.8e-86 322.8 179 78.2
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 3.0e-86 322.0 183 78.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 6.7e-86 320.9 185 77.8
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 8.8e-86 320.5 187 77.0
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 8.8e-86 320.5 175 81.1
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.1e-85 320.1 184 78.3
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-85 319.7 183 78.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.5e-85 319.7 183 78.1
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.6e-85 318.9 180 78.9
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.3e-85 318.5 183 77.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 3.3e-85 318.5 183 77.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 3.3e-85 318.5 178 78.1
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 3.3e-85 318.5 179 78.2
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 4.4e-85 318.2 187 76.5
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 5.7e-85 317.8 183 77.6
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 7.4e-85 317.4 186 77.4
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 9.7e-85 317.0 178 78.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.7e-85 317.0 178 78.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 9.7e-85 317.0 178 78.7
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 9.7e-85 317.0 178 77.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.2e-84 315.8 188 75.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.8e-84 315.5 178 78.1
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.8e-84 315.5 178 78.1
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 2.8e-84 315.5 181 75.7
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.7e-84 315.1 186 76.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.7e-84 315.1 178 79.2
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 3.7e-84 315.1 177 78.5
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.7e-84 315.1 183 79.8
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 4.8e-84 314.7 178 77.5
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.8e-84 314.7 185 76.2
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.8e-84 314.7 185 76.2
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 6.3e-84 314.3 200 73.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.3e-84 314.3 184 78.3
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.3e-84 314.3 184 78.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.4e-83 313.2 187 76.5
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.8e-83 312.8 185 75.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.8e-83 312.8 185 74.1
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.8e-83 312.8 189 76.2
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 186 74.7
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 186 76.9
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 3.1e-83 312.0 185 73.5
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 3.1e-83 312.0 178 76.4
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 4.1e-83 311.6 183 75.4
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.1e-83 311.6 181 77.3
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 5.3e-83 311.2 181 76.2
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.2e-82 310.1 185 73.0
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.2e-82 310.1 178 78.7
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.6e-82 309.7 185 73.5
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.0e-82 309.3 185 73.5
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.9e-82 307.8 186 72.0
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.7e-81 306.2 182 74.7
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.9e-81 305.4 185 73.5
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 5.0e-81 304.7 185 72.4
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 5.0e-81 304.7 185 75.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 5.0e-81 304.7 197 71.1
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 6.5e-81 304.3 181 72.9
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 8.5e-81 303.9 185 72.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 2.5e-80 302.4 215 66.0
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.2e-80 302.0 183 72.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.2e-80 301.6 185 72.4
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.5e-80 301.2 185 72.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.2e-79 300.1 182 73.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.1e-79 299.3 184 72.3
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.0e-78 297.0 168 78.6
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 2.3e-78 295.8 158 86.1
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 6.7e-78 294.3 186 71.0
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 4.4e-77 291.6 176 72.7
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.5e-77 290.8 206 64.6
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.2e-76 289.3 183 71.0
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.2e-76 289.3 183 71.0
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.0e-74 282.7 154 81.2
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.7e-74 280.8 198 69.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.9e-73 278.9 227 58.6
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.8e-73 278.5 227 58.1
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 6.5e-73 277.7 154 79.9
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 5.5e-72 274.6 189 65.1
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 4.7e-71 271.6 166 72.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.8e-70 269.6 171 72.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.3e-70 269.2 176 68.2
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 8.8e-70 267.3 179 66.5
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 8.8e-70 267.3 179 66.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.2e-69 266.9 149 76.5
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.2e-69 266.9 149 76.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 3.4e-69 265.4 179 66.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 7.5e-69 264.2 151 75.5
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 9.8e-69 263.8 180 69.4
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.7e-68 261.9 280 51.1
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.1e-67 260.4 184 67.9
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.6e-66 256.5 147 76.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.5e-66 255.0 146 77.4
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-65 252.7 123 95.9
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.5e-64 249.2 206 56.8
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 7.2e-64 247.7 188 60.6
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.1e-63 246.1 183 58.5
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 2.3e-62 242.7 170 67.1
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.2e-61 240.4 148 70.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 2.4e-59 232.6 140 72.1
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.3e-56 222.2 183 55.7
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.1e-55 219.5 182 59.9
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-54 215.3 146 74.7
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 6.8e-54 214.5 177 51.4
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.6e-53 212.6 194 57.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 8.3e-52 207.6 177 54.2
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-49 199.9 93 98.9
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 4.4e-45 185.3 197 48.7
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.1e-43 180.6 202 43.1
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.6e-42 176.8 184 53.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-42 176.0 152 61.8
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.7e-42 176.0 172 43.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.7e-42 176.0 172 43.0
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.3e-41 173.7 91 83.5
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.2e-39 167.2 208 38.0
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 6.8e-38 161.4 120 58.3
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.1e-35 152.1 178 37.6
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 7.1e-35 151.4 161 46.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.0e-33 147.5 179 36.9
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.3e-33 147.1 142 44.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 3.0e-33 146.0 93 66.7
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.9e-27 126.7 90 63.3
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 9.9e-13 77.8 69 59.4
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 6.4e-12 75.1 46 69.6
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 8.1e-07 58.2 43 65.1
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 5.3e-06 55.5 33 78.8


User provided reference genes

Program Settings