Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1785.4 864 100.0
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1743.0 864 97.6
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1332.0 871 73.8
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1323.9 865 74.1
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1321.6 867 73.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1320.8 867 73.5
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1319.3 869 72.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1311.6 866 73.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 869 72.7
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1306.2 864 72.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1304.7 876 71.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1303.9 866 72.3
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1300.8 871 71.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 876 71.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1299.6 865 72.5
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1299.3 866 71.6
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1295.0 865 72.6
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1293.9 865 71.9
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1292.3 865 71.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1292.3 869 70.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1288.5 873 70.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 864 71.4
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 867 71.7
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 863 72.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1285.0 867 71.4
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1283.1 866 71.1
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1283.1 866 70.6
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1281.9 865 71.8
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 866 72.1
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 864 70.7
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1278.5 866 70.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1277.3 864 71.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 864 71.3
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1275.8 864 70.6
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1269.2 865 71.3
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1268.8 865 70.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1268.1 867 70.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1267.3 864 70.5
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1267.3 865 69.6
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1266.9 865 70.2
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 864 70.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 858 70.9
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 870 69.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 867 68.7
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1250.3 868 70.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1248.8 867 69.9
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1248.0 864 69.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1246.9 862 69.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 886 68.8
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1243.8 864 69.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 867 67.8
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 866 69.1
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1241.1 885 67.0
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1239.2 866 68.8
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1238.4 865 68.0
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1236.1 870 68.3
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 864 67.5
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 866 69.2
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1232.2 866 67.9
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 866 67.8
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 866 67.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 863 67.8
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 865 67.1
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 862 67.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 863 67.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 865 67.2
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 865 66.9
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 864 67.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 864 67.1
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 866 67.8
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 869 67.5
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 877 66.5
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1221.1 865 66.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1220.3 866 67.1
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 866 67.0
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 865 67.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1209.5 863 68.3
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1209.1 865 67.1
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1204.9 863 66.9
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 864 67.2
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1203.7 861 67.8
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1200.7 867 67.5
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1199.5 868 66.5
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1196.8 874 65.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 865 67.5
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1189.1 874 65.3
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1185.2 863 66.6
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 823 67.4
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1124.0 869 62.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1115.5 753 72.9
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1106.3 839 64.0
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 3.5e-307 1058.1 691 72.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 2.3e-306 1055.4 646 76.5
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 8.7e-306 1053.5 865 58.0
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 2.6e-302 1042.0 863 62.0
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 8.4e-301 1036.9 862 59.5
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.9e-297 1025.8 691 70.2
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 5.7e-297 1024.2 862 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 2.9e-293 1011.9 867 55.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.6e-289 998.8 859 56.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.6e-278 962.2 867 54.0
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.4e-207 727.2 759 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.5e-159 567.8 388 69.6
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.3e-156 556.6 478 57.1
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.0e-146 522.3 470 54.5
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-122 445.3 361 62.3
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.3e-87 327.4 306 56.5
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 8.5e-67 259.6 168 71.4
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 5.1e-64 250.4 204 59.8
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 4.5e-52 210.7 174 62.1
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.9e-44 183.7 178 56.2
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 8.0e-41 173.3 195 48.2
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.6e-36 159.1 216 42.6
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.2e-30 138.7 148 48.6
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.7e-28 131.7 85 71.8
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.0e-24 119.8 69 81.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.4e-24 119.4 114 56.1
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 2.6e-23 115.2 86 67.4
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 3.7e-22 111.3 90 60.0
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-20 106.3 73 65.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-18 99.8 103 50.5
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.0e-17 93.6 273 26.0
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.4e-13 82.8 292 24.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 4.1e-13 81.3 317 25.6
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 1.6e-12 79.3 251 25.5
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.0e-11 76.6 297 25.9
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.3e-11 76.3 331 24.2
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.5e-10 72.0 316 23.4
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.3e-10 71.2 316 22.8
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.6e-10 70.9 303 23.4
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.6e-10 70.9 298 25.2
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 4.7e-09 67.8 303 25.4
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.1e-08 66.6 306 24.5
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 1.1e-08 66.6 68 48.5
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 3.1e-08 65.1 233 25.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 5.2e-08 64.3 289 24.6
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-07 63.2 33 78.8
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.5e-07 60.5 213 23.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 7.5e-07 60.5 97 38.1
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.7e-06 59.3 190 29.5
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-06 58.5 172 25.6


User provided reference genes

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