Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03322 Eucalyptus grandis HOM05D003960 ORTHO05D004297 2.9e-91 338.6 176 100.0
Eucgr.J01772 Eucalyptus grandis HOM05D003960 ORTHO05D004297 8.4e-22 107.8 64 82.8
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 2.3e-19 99.8 92 57.6
TWI63G0819 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.1e-19 98.6 63 68.3
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 6.6e-19 98.2 63 69.8
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 8.7e-19 97.8 64 68.8
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 1.1e-18 97.4 60 75.0
Gorai.013G223700 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.1e-18 97.4 86 58.1
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.5e-18 96.3 93 58.1
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 2.5e-18 96.3 93 58.1
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 2.5e-18 96.3 79 64.6
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 4.3e-18 95.5 55 76.4
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 5.6e-18 95.1 85 57.6
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 5.6e-18 95.1 56 76.8
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 7.3e-18 94.7 59 72.9
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 9.6e-18 94.4 56 76.8
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 9.6e-18 94.4 58 69.0
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.3e-17 94.0 93 57.0
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 1.6e-17 93.6 93 51.6
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 1.6e-17 93.6 65 67.7
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 2.1e-17 93.2 61 70.5
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 6.2e-17 91.7 63 68.3
Actinidia39652 Actinidia chinensis HOM05D003960 ORTHO05D004297 8.1e-17 91.3 56 73.2
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 8.1e-17 91.3 64 65.6
Lalb_Chr23g0268031 Lupinus albus HOM05D003960 ORTHO05D004297 8.1e-17 91.3 64 67.2
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 1.1e-16 90.9 81 55.6
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 1.4e-16 90.5 64 60.9
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.8e-16 90.1 62 67.7
GSVIVG01035488001 Vitis vinifera HOM05D000633 ORTHO05D000477 1.8e-16 90.1 114 46.5
Eucgr.B00068 Eucalyptus grandis HOM05D003960 ORTHO05D004297 2.4e-16 89.7 52 84.6
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 3.1e-16 89.4 61 65.6
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 3.1e-16 89.4 94 53.2
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 3.1e-16 89.4 56 69.6
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 4.0e-16 89.0 94 52.1
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 5.3e-16 88.6 80 57.5
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 5.3e-16 88.6 64 64.1
Cfa002978 Carpinus fangiana HOM05D003960 ORTHO05D004297 6.9e-16 88.2 61 65.6
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 9.0e-16 87.8 55 69.1
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 9.0e-16 87.8 58 69.0
unitig_32.g11516 Utricularia gibba HOM05D003960 ORTHO05D004297 9.0e-16 87.8 56 71.4
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 1.2e-15 87.4 72 56.9
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 1.2e-15 87.4 59 67.8
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 1.5e-15 87.0 57 68.4
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 1.5e-15 87.0 86 51.2
Medtr3g105330 Medicago truncatula HOM05D003960 ORTHO05D004297 2.0e-15 86.7 63 65.1
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 2.0e-15 86.7 59 62.7
TPR.G3570 Trifolium pratense HOM05D003960 ORTHO05D004297 2.0e-15 86.7 56 69.6
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 2.6e-15 86.3 59 67.8
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 3.4e-15 85.9 60 63.3
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 3.4e-15 85.9 64 62.5
Eucgr.K01930 Eucalyptus grandis HOM05D003960 ORTHO05D004297 4.5e-15 85.5 41 92.7
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 4.5e-15 85.5 63 60.3
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 5.8e-15 85.1 58 67.2
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 5.8e-15 85.1 95 47.4
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 7.6e-15 84.7 56 66.1
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 7.6e-15 84.7 62 62.9
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 7.6e-15 84.7 62 62.9
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 7.6e-15 84.7 61 63.9
Psat5g033920 Pisum sativum HOM05D003960 ORTHO05D004297 7.6e-15 84.7 56 69.6
AL6G32200 Arabidopsis lyrata HOM05D003960 ORTHO05D004297 9.9e-15 84.3 57 64.9
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 9.9e-15 84.3 57 64.9
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 9.9e-15 84.3 59 64.4
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 9.9e-15 84.3 57 64.9
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 1.3e-14 84.0 83 51.8
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 1.3e-14 84.0 83 51.8
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.3e-14 84.0 61 60.7
HPP92_016210 Vanilla planifolia HOM05D003960 ORTHO05D004297 1.3e-14 84.0 50 74.0
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 1.7e-14 83.6 63 57.1
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 1.7e-14 83.6 71 56.3
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 2.2e-14 83.2 57 63.2
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 2.2e-14 83.2 57 63.2
CARHR192160 Cardamine hirsuta HOM05D003960 ORTHO05D004297 2.2e-14 83.2 57 63.2
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 2.2e-14 83.2 58 67.2
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 2.2e-14 83.2 61 60.7
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 2.2e-14 83.2 57 63.2
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 2.9e-14 82.8 67 55.2
CiPaw.05G156700 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.9e-14 82.8 56 64.3
CiPaw.05G157200 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.9e-14 82.8 56 64.3
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.9e-14 82.8 56 64.3
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 2.9e-14 82.8 58 67.2
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 2.9e-14 82.8 52 65.4
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 2.9e-14 82.8 64 59.4
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 2.9e-14 82.8 57 68.4
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 2.9e-14 82.8 57 63.2
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 2.9e-14 82.8 52 67.3
BcaC03g13784 Brassica carinata HOM05D003960 ORTHO05D004297 3.8e-14 82.4 62 58.1
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 3.8e-14 82.4 61 62.3
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 3.8e-14 82.4 61 62.3
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 3.8e-14 82.4 61 62.3
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 3.8e-14 82.4 62 56.5
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 4.9e-14 82.0 62 61.3
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 4.9e-14 82.0 54 66.7
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 4.9e-14 82.0 84 51.2
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 4.9e-14 82.0 52 73.1
ATR0598G332 Amborella trichopoda HOM05D003960 ORTHO05D004297 6.4e-14 81.6 64 57.8
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 6.4e-14 81.6 52 73.1
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 6.4e-14 81.6 56 60.7
QL11p001038 Quercus lobata HOM05D003960 ORTHO05D004297 6.4e-14 81.6 57 63.2
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 6.4e-14 81.6 57 61.4
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 6.4e-14 81.6 87 57.5
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 8.4e-14 81.3 57 61.4
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 8.4e-14 81.3 60 61.7
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 8.4e-14 81.3 52 71.2
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 8.4e-14 81.3 52 71.2
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 1.4e-13 80.5 57 59.6
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 1.4e-13 80.5 57 59.6
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 1.4e-13 80.5 57 61.4
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 1.4e-13 80.5 57 61.4
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 1.4e-13 80.5 57 61.4
MSTRG.14089 Avicennia marina HOM05D003960 ORTHO05D004297 1.9e-13 80.1 57 61.4
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 1.9e-13 80.1 64 57.8
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 2.4e-13 79.7 56 58.9
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 2.4e-13 79.7 63 57.1
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 3.2e-13 79.3 57 59.6
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 3.2e-13 79.3 57 57.9
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 3.2e-13 79.3 87 50.6
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 3.2e-13 79.3 58 62.1
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 4.2e-13 79.0 57 59.6
CiPaw.03G205100 Carya illinoinensis HOM05D003960 ORTHO05D004297 4.2e-13 79.0 64 57.8
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 4.2e-13 79.0 52 67.3
VMungo1309G2154 Vigna mungo HOM05D003960 ORTHO05D004297 4.2e-13 79.0 56 58.9
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 5.4e-13 78.6 87 51.7
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 5.4e-13 78.6 56 62.5
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 5.4e-13 78.6 62 56.5
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 7.1e-13 78.2 70 51.4
Eucgr.L03350 Eucalyptus grandis HOM05D003960 ORTHO05D004297 9.3e-13 77.8 39 87.2
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 9.3e-13 77.8 58 53.4
HanXRQChr06g0171901 Helianthus annuus HOM05D003960 ORTHO05D004297 9.3e-13 77.8 60 56.7
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.2e-12 77.4 90 48.9
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 1.6e-12 77.0 54 57.4
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 2.1e-12 76.6 58 58.6
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 2.7e-12 76.3 66 54.5
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 2.7e-12 76.3 59 55.9
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 3.5e-12 75.9 100 44.0
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 3.5e-12 75.9 62 59.7
Duzib187G0159 Durio zibethinus HOM05D003960 ORTHO05D004297 4.6e-12 75.5 52 67.3
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 6.0e-12 75.1 63 57.1
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 7.9e-12 74.7 63 47.6
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 7.9e-12 74.7 57 59.6
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 1.0e-11 74.3 61 59.0
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.0e-11 74.3 58 55.2
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 1.8e-11 73.6 49 65.3
Thecc.09G065300 Theobroma cacao HOM05D003960 ORTHO05D004297 1.8e-11 73.6 52 65.4
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 3.0e-11 72.8 62 58.1
EL10Ac8g19048 Beta vulgaris HOM05D003960 ORTHO05D004297 5.1e-11 72.0 49 65.3
CANSAT56G3391 Cannabis sativa HOM05D003960 ORTHO05D004297 8.7e-11 71.2 50 64.0
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 1.1e-10 70.9 63 55.6
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 1.1e-10 70.9 64 50.0
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 1.1e-10 70.9 62 50.0
Os08g0455900 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 2.5e-10 69.7 53 54.7
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 3.3e-10 69.3 45 68.9
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 5.6e-10 68.6 95 40.0
C03p11710 Brassica napus HOM05D003960 ORTHO05D004297 7.4e-10 68.2 50 56.0
vmacro17132 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 9.6e-10 67.8 48 62.5
BolC3t13642H Brassica oleracea HOM05D003960 ORTHO05D004297 3.7e-09 65.9 45 60.0
Rhsim05G0006800 Rhododendron simsii HOM05D003960 ORTHO05D004297 6.2e-09 65.1 61 50.8
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis HOM05D003960 ORTHO05D004297 5.3e-08 62.0 60 50.0
Gohir.D13G195000 Gossypium hirsutum HOM05D003960 ORTHO05D004297 6.9e-08 61.6 41 70.7
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 9.0e-08 61.2 85 38.8
CBR_g10995 Chara braunii HOM05D000601 ORTHO05D000407 4.5e-07 58.9 70 41.4
SMO174G0135 Selaginella moellendorffii HOM05D003960 ORTHO05D004297 4.5e-07 58.9 49 53.1
Nitab4.5_0003159g0080 Nicotiana tabacum HOM05D003960 ORTHO05D004297 3.8e-06 55.8 57 52.6


User provided reference genes

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