Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 4.9e-93 345.1 274 100.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.9e-49 200.3 130 73.8
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.6e-48 196.1 130 73.1
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.1e-47 194.5 126 73.8
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.4e-47 194.1 174 63.2
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.8e-47 193.7 148 66.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 4.0e-47 192.6 135 69.6
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.2e-46 191.0 134 70.1
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.4e-46 189.5 134 70.9
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 7.6e-46 188.3 131 67.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 8.4e-45 184.9 127 70.9
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-45 184.9 122 73.8
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-45 184.9 122 73.8
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 8.4e-45 184.9 125 72.0
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 1.1e-44 184.5 128 71.9
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 9.3e-44 181.4 124 67.7
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.1e-43 180.3 133 69.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-43 178.7 127 70.1
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.3e-42 176.8 144 64.6
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 3.0e-42 176.4 135 70.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 5.1e-42 175.6 123 70.7
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 5.1e-42 175.6 181 63.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.5e-41 173.3 131 62.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-41 172.6 126 67.5
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 9.6e-41 171.4 119 68.1
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 9.6e-41 171.4 130 65.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.8e-40 169.9 183 61.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 2.8e-40 169.9 135 67.4
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 4.8e-40 169.1 102 75.5
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 4.8e-40 169.1 138 63.0
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.2e-40 168.7 170 57.6
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.4e-39 166.8 135 60.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 6.9e-39 165.2 128 67.2
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 9.0e-39 164.9 117 69.2
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.0e-38 163.7 147 57.1
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.0e-38 163.7 147 57.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.6e-38 163.3 117 65.8
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.6e-38 163.3 127 59.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.6e-38 163.3 172 54.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.4e-38 162.9 146 64.4
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.8e-38 162.2 128 63.3
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 7.6e-38 161.8 121 63.6
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 1.7e-37 160.6 124 64.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.2e-37 160.2 183 57.9
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.2e-37 160.2 142 61.3
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.1e-36 157.9 133 62.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.9e-36 157.1 126 61.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 5.5e-36 155.6 113 68.1
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 5.5e-36 155.6 130 60.0
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 9.3e-36 154.8 96 80.2
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.2e-35 154.5 129 62.0
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.2e-35 154.5 129 62.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.6e-35 154.1 125 60.8
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.6e-35 154.1 125 60.8
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.1e-35 153.7 144 56.2
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 6.0e-35 152.1 125 60.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 6.0e-35 152.1 92 77.2
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 7.9e-35 151.8 141 57.4
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-34 151.0 134 60.4
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.3e-34 151.0 101 74.3
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.8e-34 150.6 113 67.3
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.8e-34 150.6 125 62.4
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.8e-34 150.6 128 59.4
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.0e-34 149.8 122 63.9
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.0e-34 149.8 122 63.9
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-33 147.9 97 74.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-33 147.1 98 73.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.3e-33 146.0 118 63.6
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.3e-33 146.0 118 63.6
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 4.3e-33 146.0 91 73.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 1.3e-32 144.4 96 69.8
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 3.7e-32 142.9 99 69.7
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 4.8e-32 142.5 120 61.7
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 8.2e-32 141.7 119 58.8
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 8.2e-32 141.7 168 50.0
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-31 141.0 183 55.2
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 3.1e-31 139.8 142 55.6
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 4.0e-31 139.4 167 47.3
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 9.0e-31 138.3 165 48.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.0e-30 137.1 124 58.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 2.6e-30 136.7 148 52.0
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.5e-30 136.0 97 69.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.8e-30 135.6 98 71.4
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 7.6e-30 135.2 115 62.6
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 1.0e-29 134.8 104 62.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.9e-29 133.3 126 57.9
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 3.8e-29 132.9 120 55.8
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.8e-29 132.9 89 70.8
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.9e-29 132.5 115 59.1
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 6.5e-29 132.1 134 53.7
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 8.4e-29 131.7 85 74.1
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.4e-28 131.0 90 71.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.2e-28 129.8 80 77.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 4.2e-28 129.4 98 70.4
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.5e-28 129.0 133 58.6
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 5.5e-28 129.0 175 44.0
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.1e-27 127.1 78 82.1
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 7.9e-27 125.2 89 66.3
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.8e-26 124.0 77 77.9
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.3e-25 119.4 77 77.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.3e-25 119.4 132 49.2
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 9.7e-25 118.2 124 51.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-24 117.9 72 79.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.2e-24 117.1 92 64.1
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.8e-24 115.9 92 63.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 4.8e-24 115.9 98 67.3
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 6.3e-24 115.5 67 82.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.3e-24 115.5 80 73.8
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 4.1e-23 112.8 182 42.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 9.0e-23 111.7 73 76.7
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 9.0e-23 111.7 96 56.2
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-22 110.2 68 79.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-22 109.4 62 77.4
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 4.5e-22 109.4 134 47.0
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 3.8e-21 106.3 80 62.5
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.4e-20 104.4 73 74.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 7.2e-20 102.1 66 71.2
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 9.3e-20 101.7 60 76.7
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 4.6e-19 99.4 93 54.8
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 4.6e-19 99.4 151 43.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.6e-19 99.4 135 48.1
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 6.1e-19 99.0 87 62.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.3e-18 97.1 143 44.8
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-18 96.3 90 54.4
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-18 96.3 90 54.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 5.1e-18 95.9 144 45.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.3e-17 92.8 86 57.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 9.7e-17 91.7 86 60.5
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.7e-16 90.9 67 74.6
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.8e-16 89.4 49 89.8
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 4.8e-16 89.4 91 50.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 6.3e-16 89.0 140 37.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-15 88.2 60 71.7
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 1.4e-15 87.8 126 45.2
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.4e-15 87.8 70 57.1
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 3.1e-15 86.7 67 65.7
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.1e-15 86.7 107 46.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 9.1e-15 85.1 54 81.5
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.7e-14 82.0 50 82.0
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.3e-13 81.3 73 57.5
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-13 80.9 119 45.4
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.7e-13 80.9 98 48.0
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.1e-12 78.2 127 44.1
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.1e-12 78.2 54 75.9
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.1e-12 78.2 136 42.6
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.4e-12 77.8 47 80.9
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.4e-12 77.8 44 86.4
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.4e-12 77.8 88 54.5
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.9e-12 77.4 61 60.7
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.9e-12 77.4 49 83.7
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 2.5e-12 77.0 109 44.0
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 3.2e-12 76.6 42 88.1
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 3.2e-12 76.6 72 55.6
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 3.2e-12 76.6 138 42.8
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.2e-12 76.3 130 42.3
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 4.2e-12 76.3 48 77.1
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 2.1e-11 73.9 41 85.4
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 7.9e-11 72.0 49 73.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 7.9e-11 72.0 72 55.6
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 7.9e-11 72.0 38 89.5
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.8e-10 70.9 49 73.5
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.8e-10 70.9 153 39.2
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.0e-10 70.1 101 42.6
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.9e-10 69.7 103 39.8
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 5.1e-10 69.3 60 63.3
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 5.7e-09 65.9 101 43.6
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 7.4e-09 65.5 58 62.1
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 9.7e-09 65.1 60 60.0
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 8.2e-08 62.0 87 42.5
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 8.2e-08 62.0 46 69.6
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 1.4e-07 61.2 89 34.8
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.4e-07 60.5 52 61.5
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.2e-06 58.2 37 75.7
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 3.4e-06 56.6 27 96.3
Oeu002907.1 Olea europaea HOM05D002369 ORTHO05D002435 4.5e-06 56.2 72 41.7
Sed0012249 Sechium edule HOM05D002369 ORTHO05D002435 4.5e-06 56.2 83 41.0


User provided reference genes

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