Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.0e-185 651.4 345 100.0
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.1e-158 563.5 345 83.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 5.4e-158 561.2 345 82.9
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 2.7e-157 558.9 345 82.9
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.7e-157 558.9 346 84.1
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.9e-155 552.7 344 83.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 9.6e-155 550.4 345 81.4
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 2.1e-154 549.3 346 82.9
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.8e-154 548.9 346 82.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 6.9e-153 544.3 345 80.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 9.0e-153 543.9 345 80.9
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.2e-152 543.5 345 80.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.2e-152 543.5 345 81.4
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.3e-151 540.0 345 81.4
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.2e-151 539.3 347 81.8
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-151 538.9 345 80.9
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.9e-151 538.9 345 80.9
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.8e-151 538.5 345 80.3
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 4.9e-151 538.1 345 78.8
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 9.3e-150 533.9 345 78.3
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-149 533.5 345 80.0
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-149 533.1 345 80.6
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.6e-149 533.1 345 80.3
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.7e-149 532.3 345 78.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.5e-149 531.9 345 79.4
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.0e-148 530.4 345 80.3
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.3e-148 530.0 345 78.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.8e-148 529.6 345 80.6
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-148 529.3 345 80.3
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 2.3e-148 529.3 343 80.8
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 3.0e-148 528.9 345 80.6
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.5e-147 525.8 348 79.9
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 4.3e-147 525.0 345 77.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 9.6e-147 523.9 343 79.3
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.4e-145 520.0 343 78.4
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.4e-145 520.0 345 78.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.4e-145 519.2 344 77.6
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 4.0e-145 518.5 343 78.4
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 5.3e-145 518.1 343 78.4
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 6.9e-145 517.7 343 77.6
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 9.0e-145 517.3 345 78.3
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.2e-144 516.9 343 77.8
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.5e-144 516.5 343 77.6
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.5e-144 516.5 343 77.6
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 4.5e-144 515.0 343 77.3
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 4.5e-144 515.0 343 77.3
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 4.5e-144 515.0 343 77.3
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.7e-143 513.1 345 77.1
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.2e-143 512.7 350 77.4
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 77.6
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 77.3
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.9e-143 512.3 345 77.4
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 2.9e-143 512.3 345 76.8
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 4.9e-143 511.5 367 73.8
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 6.4e-143 511.1 392 70.2
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 76.2
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 76.2
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.4e-142 510.0 343 77.0
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.9e-142 509.6 346 76.6
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 2.4e-142 509.2 345 77.1
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 5.5e-142 508.1 355 75.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.2e-141 506.9 346 76.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 2.1e-141 506.1 341 76.5
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 2.7e-141 505.8 337 77.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 6.0e-141 504.6 345 76.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.0e-140 503.8 343 75.2
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.0e-140 502.3 345 74.8
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 3.9e-140 501.9 355 74.6
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 3.9e-140 501.9 347 75.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 5.1e-140 501.5 344 76.2
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 5.6e-139 498.0 345 76.2
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 7.4e-139 497.7 337 78.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 7.4e-139 497.7 347 75.5
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 9.6e-139 497.3 345 76.2
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.3e-138 496.9 345 74.5
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 3.7e-138 495.4 345 73.9
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.4e-137 493.4 351 74.6
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.4e-137 493.4 336 74.4
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 4.0e-137 491.9 345 73.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.0e-137 491.9 345 75.1
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.3e-137 491.5 345 75.1
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 2.6e-136 489.2 325 77.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 4.9e-135 485.0 358 72.1
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.5e-135 484.6 343 74.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 73.6
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 3.5e-133 478.8 415 64.6
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.1e-131 473.8 347 73.2
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.5e-131 473.4 345 73.3
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 2.4e-129 466.1 272 86.4
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 2.6e-128 462.6 309 75.7
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 4.5e-128 461.8 336 71.4
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 1.0e-127 460.7 344 68.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 3.8e-127 458.8 335 72.2
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.2e-126 455.7 313 76.0
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.2e-125 453.8 308 76.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 3.0e-124 449.1 308 76.0
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.9e-123 446.4 272 82.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 6.9e-121 438.0 345 69.6
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.2e-120 437.2 345 69.3
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.3e-119 433.7 345 68.7
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.0e-116 424.1 345 67.8
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.4e-116 423.7 400 60.5
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 2.3e-116 422.9 343 66.2
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 3.3e-115 419.1 295 76.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 3.3e-115 419.1 293 75.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 6.3e-114 414.8 328 70.4
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 9.1e-113 411.0 418 57.7
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 4.2e-102 375.6 222 82.9
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.4e-100 370.5 343 59.8
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 6.7e-100 368.2 222 83.3
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 6.7e-100 368.2 384 54.2
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 5.0e-95 352.1 345 59.4
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.0e-91 340.1 246 73.2
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.7e-90 337.0 204 82.4
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 9.5e-86 321.2 435 48.0
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.4e-83 312.4 344 52.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.7e-80 303.1 327 51.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.4e-73 280.0 249 61.0
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.4e-73 280.0 200 73.5
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 4.1e-73 279.3 169 82.8
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 9.2e-73 278.1 249 58.2
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.5e-67 260.8 303 47.2
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 9.2e-65 251.5 255 55.7
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.5e-56 223.0 165 75.8
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 8.6e-55 218.4 144 79.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.6e-53 214.2 238 55.9
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.4e-52 210.3 144 70.8
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.4e-49 201.1 194 54.6
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 2.1e-45 187.2 364 35.7
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 4.0e-44 183.0 184 59.2
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.2e-43 181.4 110 82.7
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.8e-43 179.1 131 72.5
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.6e-40 171.0 339 34.2
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.0e-39 168.3 347 32.9
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.3e-39 167.2 323 31.6
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.8e-36 157.5 132 67.4
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 2.1e-29 134.0 113 64.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 5.3e-28 129.4 74 86.5
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.5e-25 119.4 95 68.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.1e-20 105.1 95 63.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 1.8e-20 104.4 106 60.4
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 4.5e-19 99.8 73 65.8
MD01G1007700 Malus domestica HOM05D005314 ORTHO05D246798 4.3e-06 56.6 39 69.2


User provided reference genes

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