Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.4e-309 1065.4 535 100.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.3e-163 579.7 508 59.8
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.7e-137 492.7 243 100.0
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.1e-128 463.0 538 47.6
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.1e-128 462.6 527 50.1
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.9e-125 453.8 538 47.6
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 7.2e-125 451.8 534 48.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.0e-123 448.0 533 48.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.0e-123 446.4 534 47.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.2e-123 445.7 533 47.7
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.1e-120 434.9 533 46.7
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.9e-117 427.2 525 47.2
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.2e-117 425.2 496 49.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.0e-115 419.9 519 46.4
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 9.7e-114 414.8 562 44.5
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.3e-113 414.5 535 44.7
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.7e-113 414.1 490 47.1
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.5e-110 401.7 490 46.7
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.1e-108 397.1 490 46.5
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 5.7e-106 389.0 486 46.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 5.7e-106 389.0 515 43.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.7e-105 387.5 510 46.3
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.7e-105 387.5 508 44.1
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.8e-102 376.3 494 44.9
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.3e-101 373.2 379 52.8
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.0e-100 368.6 387 51.7
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 4.0e-99 366.3 532 43.6
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.9e-99 365.2 499 45.5
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.2e-98 364.8 500 44.8
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.0e-98 364.0 513 43.7
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.5e-98 362.1 503 45.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.3e-97 361.3 506 42.7
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.1e-96 358.2 502 43.4
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.6e-94 349.0 501 42.9
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.1e-92 344.0 565 40.5
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 3.6e-92 343.2 500 40.8
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.6e-92 343.2 505 41.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 6.1e-92 342.4 527 41.0
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 3.0e-91 340.1 544 38.4
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.0e-90 337.4 524 39.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 5.8e-90 335.9 513 41.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.9e-89 332.8 386 49.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.9e-89 332.8 534 39.0
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.3e-89 332.0 510 39.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.4e-88 330.5 540 38.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.1e-88 329.7 511 39.9
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.4e-88 329.3 517 39.3
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.2e-87 328.2 503 40.6
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-87 328.2 496 39.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.0e-87 327.4 532 37.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-86 325.1 505 39.2
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-86 325.1 505 39.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.3e-86 323.9 535 39.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 6.6e-86 322.4 492 39.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.5e-85 321.2 500 39.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.9e-85 320.9 548 36.9
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.1e-83 313.5 526 37.6
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-81 308.1 591 37.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 3.7e-81 306.6 423 42.1
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 4.9e-81 306.2 393 46.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.7e-79 300.4 517 36.6
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.6e-79 299.7 550 34.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 6.0e-79 299.3 505 37.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.0e-78 296.2 546 36.4
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.0e-78 296.2 528 34.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.3e-77 293.5 528 35.0
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.6e-76 291.2 423 40.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.8e-76 290.4 552 34.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.8e-76 290.4 444 40.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 8.1e-76 288.9 426 39.9
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.0e-75 286.6 539 34.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-74 285.0 467 40.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.8e-74 282.7 502 35.3
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.8e-74 282.7 502 35.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 7.5e-74 282.3 484 35.7
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.3e-73 281.6 513 35.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 4.9e-73 279.6 475 37.3
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.9e-72 277.7 518 34.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.9e-72 277.7 523 35.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.5e-71 273.5 498 33.7
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.6e-71 273.1 523 34.4
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.0e-70 271.9 486 36.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 6.6e-70 269.2 474 37.8
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.9e-69 267.7 523 34.8
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.6e-69 266.2 542 33.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.8e-68 263.8 462 36.4
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.6e-68 263.5 483 33.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.7e-68 263.1 512 35.5
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.8e-67 261.2 512 36.5
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.8e-67 261.2 473 35.5
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.4e-67 260.8 525 32.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.1e-67 260.4 423 37.8
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.2e-66 258.5 481 34.3
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.2e-66 258.5 496 35.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.6e-66 257.3 527 31.7
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 5.8e-66 256.1 525 34.7
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 7.6e-66 255.8 414 37.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 9.9e-66 255.4 529 33.3
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-65 255.0 492 33.1
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.2e-65 254.2 531 34.3
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.9e-65 253.8 529 33.3
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.9e-65 253.8 538 31.2
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 3.8e-65 253.4 518 35.7
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.9e-65 253.1 473 34.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 4.9e-65 253.1 461 35.8
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 8.4e-65 252.3 401 38.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 8.4e-65 252.3 492 31.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 7.1e-64 249.2 438 35.6
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.1e-64 249.2 524 33.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.2e-64 248.8 510 32.9
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 2.7e-63 247.3 512 36.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.7e-63 247.3 507 32.7
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.7e-62 244.6 410 36.8
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.3e-62 244.2 262 53.1
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.3e-62 244.2 524 33.8
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 3.9e-62 243.4 522 32.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.1e-61 241.9 407 38.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.1e-61 241.9 486 34.4
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 5.6e-61 239.6 458 34.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.1e-60 237.7 497 33.6
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.4e-59 235.0 521 33.6
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.5e-58 231.5 533 34.1
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.6e-58 230.7 475 31.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.4e-58 230.3 432 35.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-57 227.6 473 33.4
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.9e-57 226.5 441 34.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.1e-56 225.3 273 48.7
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.8e-55 219.2 515 32.0
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.3e-54 218.4 502 34.3
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.3e-54 217.6 492 34.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 3.0e-54 217.2 491 34.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.9e-54 216.9 498 31.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 6.6e-54 216.1 499 34.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 8.7e-54 215.7 493 33.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.3e-53 213.8 480 32.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.4e-51 208.4 385 35.8
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.7e-49 201.4 490 31.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.7e-49 201.4 460 32.4
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 6.4e-49 199.5 384 31.5
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 8.4e-49 199.1 504 31.3
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.4e-48 198.4 526 31.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.4e-48 197.6 480 29.0
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.9e-46 190.3 404 30.9
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.6e-42 177.6 253 42.7
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-41 175.3 285 37.5
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 2.2e-41 174.5 268 38.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-40 171.8 266 38.3
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.0e-38 165.6 276 38.8
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.9e-38 163.7 257 37.0
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.6e-36 158.3 254 37.8
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 2.8e-36 157.5 287 34.8
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 3.1e-35 154.1 293 34.1
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.6e-31 141.7 270 37.0
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-30 139.0 291 32.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.7e-30 136.3 270 31.1
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-27 128.6 251 31.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.4e-27 127.9 234 33.3
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-25 120.6 244 33.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.8e-25 120.6 221 33.9
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.1e-24 119.0 282 30.5
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.0e-21 108.2 167 40.7
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.8e-20 104.4 408 27.2
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 1.1e-19 102.4 141 40.4
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 5.3e-19 100.1 241 28.6
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 9.1e-19 99.4 246 32.5
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-18 98.6 254 31.5
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 8.5e-17 92.8 136 38.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.1e-13 82.4 85 42.4
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.0e-13 81.6 106 43.4
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.2e-12 78.2 140 35.0
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 6.3e-12 76.6 198 28.8
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 1.2e-10 72.4 355 25.6
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.6e-10 71.2 198 28.3
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.8e-09 67.4 98 37.8


User provided reference genes

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