Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 1.6e-112 409.5 206 100.0
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 6.5e-66 254.6 207 63.3
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 3.2e-65 252.3 206 61.2
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 4.8e-61 238.4 200 60.5
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.4e-60 236.9 201 59.7
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.8e-60 236.5 198 63.1
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 9.1e-60 234.2 201 61.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.4e-59 232.3 200 59.0
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 3.4e-59 232.3 176 67.6
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.9e-59 231.5 201 60.7
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 5.9e-59 231.5 197 64.5
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 1.3e-58 230.3 202 58.4
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 2.2e-58 229.6 181 66.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 1.9e-57 226.5 189 62.4
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 2.5e-57 226.1 199 59.3
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 7.2e-57 224.6 203 56.7
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 9.4e-57 224.2 206 58.3
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.7e-56 222.6 180 61.7
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.7e-56 222.6 182 61.0
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 3.6e-56 222.2 202 60.4
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 6.1e-56 221.5 199 58.8
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.4e-55 220.3 204 56.4
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.3e-55 219.5 280 45.7
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.3e-55 219.5 179 62.0
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 8.8e-55 217.6 169 65.1
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.1e-54 217.2 206 56.8
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 2.0e-54 216.5 199 58.8
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 2.6e-54 216.1 181 58.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.6e-54 216.1 206 55.8
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.3e-54 215.7 167 64.1
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 4.4e-54 215.3 181 60.8
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 4.4e-54 215.3 178 60.1
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 4.4e-54 215.3 197 57.9
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 7.4e-54 214.5 181 59.7
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 7.4e-54 214.5 166 64.5
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 9.7e-54 214.2 173 61.3
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.3e-53 213.8 209 54.5
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 1.7e-53 213.4 155 68.4
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.7e-53 213.4 176 63.6
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 2.2e-53 213.0 176 63.1
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.8e-53 212.6 187 57.2
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.8e-53 212.6 187 58.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 2.8e-53 212.6 199 58.8
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.8e-53 212.6 183 61.2
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 4.8e-53 211.8 204 56.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 8.2e-53 211.1 160 66.2
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.4e-52 210.3 206 55.8
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 1.4e-52 210.3 182 60.4
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.8e-52 209.9 178 59.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.8e-52 209.9 205 56.6
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.4e-52 209.5 180 58.9
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 2.4e-52 209.5 199 58.3
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 3.1e-52 209.1 202 56.9
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 3.1e-52 209.1 173 64.2
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 4.1e-52 208.8 162 64.8
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 5.3e-52 208.4 169 60.9
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 9.1e-52 207.6 181 58.6
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.6e-51 206.8 167 62.3
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.6e-51 206.8 172 62.2
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.6e-51 206.8 173 57.8
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 2.0e-51 206.5 205 54.6
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-51 206.5 199 57.3
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 4.5e-51 205.3 185 58.9
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 2.2e-50 203.0 188 57.4
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 2.9e-50 202.6 206 53.4
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.9e-50 202.6 177 63.3
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 3.8e-50 202.2 163 63.8
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 5.0e-50 201.8 182 58.2
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 6.5e-50 201.4 177 62.7
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 6.5e-50 201.4 166 63.3
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 8.5e-50 201.1 199 54.8
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.1e-49 200.7 170 60.0
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.5e-49 200.3 197 52.3
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 1.9e-49 199.9 172 62.2
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.5e-49 199.5 181 56.4
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 3.2e-49 199.1 201 57.7
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 5.5e-49 198.4 150 65.3
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 7.2e-49 198.0 181 59.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.6e-48 196.8 181 59.1
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.6e-48 196.8 201 54.7
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.1e-48 196.4 151 65.6
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 188 55.9
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 188 55.9
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-47 193.4 188 55.9
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.0e-47 192.2 140 68.6
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 8.8e-47 191.0 199 54.3
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.5e-46 190.3 155 63.2
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 2.0e-46 189.9 172 61.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 7.5e-46 188.0 182 55.5
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 1.4e-44 183.7 179 54.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 2.4e-44 183.0 142 64.1
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 5.3e-44 181.8 145 63.4
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 5.3e-44 181.8 187 56.1
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.0e-42 177.6 144 64.6
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 9.4e-41 171.0 139 59.7
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.1e-40 169.9 187 51.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 3.6e-40 169.1 177 54.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 8.0e-40 167.9 198 50.5
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.8e-39 166.8 195 50.8
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 3.4e-38 162.5 143 59.4
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.7e-37 160.2 208 46.6
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 3.7e-37 159.1 196 47.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 8.3e-37 157.9 119 61.3
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-36 156.8 164 47.6
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.4e-36 156.4 140 58.6
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 2.0e-35 153.3 122 63.1
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 3.5e-35 152.5 140 57.9
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 1.3e-34 150.6 181 48.6
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 3.3e-33 146.0 131 60.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 2.1e-32 143.3 179 49.7
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 4.7e-32 142.1 158 49.4
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 4.7e-32 142.1 148 52.7
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 6.3e-29 131.7 134 53.0
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 1.8e-28 130.2 108 63.0
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 9.2e-28 127.9 168 45.8
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 9.2e-28 127.9 168 45.8
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.2e-27 127.5 87 69.0
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 7.8e-27 124.8 153 48.4
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 7.8e-27 124.8 148 54.1
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.6e-25 118.6 91 61.5
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 8.0e-24 114.8 200 38.0
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 4.0e-23 112.5 158 40.5
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.2e-22 110.9 137 46.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 3.4e-22 109.4 115 52.2
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 9.5e-17 91.3 94 54.3
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 6.2e-16 88.6 81 54.3
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.4e-12 77.4 73 53.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.2e-12 76.3 43 81.4
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 1.7e-10 70.5 179 32.4
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.9e-09 67.0 96 44.8
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-08 63.2 109 34.9
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 1.4e-07 60.8 162 30.2
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-07 60.5 43 62.8
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.0e-07 59.3 71 42.3
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 8.9e-07 58.2 50 50.0


User provided reference genes

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