Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 4.7e-233 810.8 409 100.0
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 4.3e-194 681.4 417 83.0
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 4.0e-192 674.9 419 84.5
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.2e-192 674.5 417 82.0
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 6.8e-192 674.1 417 82.3
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 1.5e-191 672.9 420 82.4
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 2.6e-191 672.2 415 80.7
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 9.8e-191 670.2 415 81.7
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 1.3e-190 669.8 417 82.3
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.7e-190 668.3 413 82.1
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.4e-190 667.5 417 81.3
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.4e-189 665.6 417 81.5
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 5.4e-189 664.5 418 83.0
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 9.2e-189 663.7 413 81.1
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.3e-187 659.8 413 80.9
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 3.9e-187 658.3 415 78.6
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 5.6e-186 654.4 415 79.3
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 7.3e-186 654.1 419 78.0
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 9.5e-186 653.7 413 80.4
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 9.5e-186 653.7 418 78.2
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.6e-185 652.9 419 78.8
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.6e-185 652.9 419 78.8
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.6e-185 652.9 417 79.1
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 2.1e-185 652.5 413 80.4
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 3.6e-185 651.7 419 78.5
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 4.7e-185 651.4 419 79.0
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.1e-184 650.2 414 78.5
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 3.1e-184 648.7 416 78.8
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 1.2e-183 646.7 415 79.5
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 1.2e-183 646.7 414 78.7
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 2.0e-183 646.0 410 79.8
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 5.8e-183 644.4 417 80.1
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 1.3e-182 643.3 370 85.4
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 1.7e-182 642.9 444 74.1
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 8.3e-182 640.6 412 79.1
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.1e-181 640.2 417 77.2
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.9e-181 639.4 408 78.4
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 4.1e-181 638.3 412 78.9
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 5.4e-181 637.9 409 78.2
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 1.6e-180 636.3 424 77.6
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 3.5e-180 635.2 413 78.5
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 4.6e-180 634.8 413 77.7
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 7.8e-180 634.0 418 76.3
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 5.1e-179 631.3 417 78.2
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 8.6e-179 630.6 414 77.1
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 7.3e-178 627.5 404 78.2
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 9.5e-178 627.1 420 75.5
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 1.2e-177 626.7 406 78.1
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 8.1e-177 624.0 417 77.0
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.1e-176 623.6 346 87.6
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.1e-176 623.6 426 75.4
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 3.1e-176 622.1 344 87.5
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 1.5e-175 619.8 405 77.8
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 5.8e-175 617.8 367 82.0
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 5.8e-175 617.8 386 79.0
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 9.9e-175 617.1 343 86.9
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 1.3e-174 616.7 370 82.4
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 1.9e-173 612.8 406 75.1
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 4.2e-173 611.7 405 76.5
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 5.4e-173 611.3 417 75.3
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 2.7e-172 609.0 357 84.6
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 1.0e-171 607.1 403 77.2
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 2.0e-167 592.8 358 79.9
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.3e-166 590.1 333 86.5
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 1.7e-166 589.7 405 73.8
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.9e-166 589.0 386 76.4
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.9e-166 589.0 386 76.4
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 2.9e-166 589.0 405 73.6
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 4.2e-165 585.1 360 79.2
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.6e-164 583.2 409 71.9
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 2.7e-164 582.4 370 81.1
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 3.5e-164 582.0 343 82.5
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 4.6e-164 581.6 418 73.2
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 2.3e-163 579.3 338 82.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 8.7e-163 577.4 409 72.4
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 1.1e-162 577.0 425 69.6
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 1.5e-162 576.6 425 70.1
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 1.6e-161 573.2 409 71.9
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 3.6e-161 572.0 404 69.8
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 3.6e-161 572.0 343 81.0
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 1.1e-160 570.5 408 69.6
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.2e-159 567.0 401 70.6
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 3.4e-159 565.5 348 77.6
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 7.6e-159 564.3 408 70.3
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 8.4e-158 560.8 417 72.7
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 8.4e-158 560.8 409 70.9
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 6.7e-155 551.2 418 70.6
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 1.9e-154 549.7 391 72.6
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 3.3e-154 548.9 360 75.0
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 3.7e-153 545.4 318 82.7
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 4.8e-153 545.0 386 69.9
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 8.1e-153 544.3 343 77.3
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 1.1e-152 543.9 377 71.9
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 5.3e-152 541.6 419 68.0
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.3e-150 537.0 397 72.3
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 1.9e-149 533.1 299 86.3
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 3.2e-149 532.3 361 71.2
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 8.7e-147 524.2 337 80.1
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 9.6e-146 520.8 374 70.9
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 1.4e-144 516.9 348 70.7
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 1.8e-139 500.0 342 70.5
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 2.3e-139 499.6 345 73.3
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 8.7e-139 497.7 437 62.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 2.9e-134 482.6 270 87.4
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 3.8e-134 482.3 414 63.5
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 3.0e-131 472.6 358 64.8
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 2.2e-126 456.4 400 59.5
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.1e-125 454.1 254 87.0
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 3.0e-123 446.0 299 77.3
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 5.7e-122 441.8 340 61.8
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.2e-105 386.7 213 88.7
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 5.4e-96 355.5 203 83.7
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 4.9e-89 332.4 184 85.9
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 3.2e-88 329.7 209 78.0
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 3.0e-78 296.6 204 69.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 3.7e-65 253.1 278 48.6
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 9.0e-51 205.3 382 36.4
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 6.4e-49 199.1 123 85.4
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 4.6e-47 193.0 246 47.2
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.4e-43 180.6 149 63.1
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.6e-36 157.9 101 72.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 5.5e-32 142.9 85 74.1
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 5.7e-29 132.9 165 46.1
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 1.3e-28 131.7 84 77.4
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 5.3e-27 126.3 74 79.7
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 3.5e-23 113.6 119 52.1
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 6.1e-23 112.8 119 51.3
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.1e-16 92.0 74 67.6
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.5e-16 90.9 44 95.5
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 8.8e-14 82.4 100 46.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 1.4e-11 75.1 112 45.5
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 1.3e-09 68.6 48 66.7
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 2.9e-09 67.4 93 43.0
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 1.2e-07 62.0 38 76.3


User provided reference genes

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