Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 0.0e+00 1227.6 594 100.0
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 3.4e-232 808.5 477 77.8
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 7.5e-232 807.4 522 73.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 8.3e-231 803.9 534 72.7
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.4e-230 801.2 517 73.5
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 4.5e-229 798.1 481 76.5
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.5e-227 793.1 573 67.4
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.9e-227 792.7 519 75.0
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.3e-227 792.0 442 80.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 3.3e-227 792.0 485 75.3
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 4.3e-227 791.6 521 72.2
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 9.5e-227 790.4 431 84.5
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.6e-226 788.5 462 77.1
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.6e-226 788.5 462 77.1
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 6.1e-226 787.7 510 73.9
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 1.4e-225 786.6 444 79.7
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.8e-225 786.2 479 76.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 6.8e-225 784.3 516 73.1
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.9e-225 783.9 509 73.1
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 2.0e-224 782.7 517 72.7
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.6e-224 782.3 524 70.4
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 4.4e-224 781.6 503 73.4
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.9e-223 778.9 524 70.0
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 4.1e-222 775.0 430 80.7
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 7.0e-222 774.2 445 77.8
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 9.2e-222 773.9 428 80.8
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.7e-221 772.3 477 74.8
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 4.6e-221 771.5 428 80.6
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.8e-221 770.8 464 75.9
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.3e-220 770.0 448 78.1
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 5.0e-220 768.1 436 80.7
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.6e-220 767.7 479 74.9
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 6.6e-220 767.7 428 79.9
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 2.5e-219 765.8 517 69.4
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.1e-218 762.7 436 78.4
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 4.7e-218 761.5 516 70.9
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 6.2e-218 761.1 438 78.8
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 6.2e-218 761.1 508 72.6
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 5.2e-217 758.1 430 79.1
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 8.9e-217 757.3 523 68.5
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 8.9e-217 757.3 425 78.6
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.2e-216 756.9 425 78.4
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.5e-216 756.5 436 77.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.5e-216 756.5 491 71.7
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.5e-216 756.5 527 68.1
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.8e-216 754.6 523 68.1
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 7.5e-216 754.2 431 79.4
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.3e-215 753.4 428 78.0
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.2e-215 752.7 432 77.5
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 2.9e-215 752.3 428 77.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.9e-215 752.3 524 67.9
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 3.7e-215 751.9 495 72.1
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 8.3e-215 750.7 478 72.2
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.1e-214 750.4 428 77.1
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 1.4e-214 750.0 531 67.8
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 9.2e-214 747.3 444 75.9
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 1.2e-213 746.9 492 73.4
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 3.5e-213 745.3 492 73.2
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 6.0e-213 744.6 425 77.6
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.3e-212 743.4 446 76.7
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.3e-212 743.4 455 73.8
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.0e-212 742.3 457 74.6
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.5e-211 740.0 493 72.8
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.5e-211 740.0 493 72.8
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.5e-211 739.2 425 78.1
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.3e-211 738.8 441 76.0
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.3e-211 738.8 433 75.8
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 3.3e-211 738.8 426 76.5
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 9.5e-211 737.3 442 75.8
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.2e-210 736.9 426 76.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 3.6e-210 735.3 475 71.8
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 4.7e-210 734.9 426 76.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 8.1e-210 734.2 442 75.8
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 8.1e-210 734.2 442 76.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 8.1e-210 734.2 433 77.1
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 8.9e-209 730.7 489 69.1
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.0e-208 729.6 442 74.4
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 4.4e-208 728.4 458 73.4
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 5.8e-208 728.0 520 68.7
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.5e-208 727.6 487 71.7
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 9.8e-208 727.2 430 76.5
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.7e-207 725.3 428 75.9
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 3.7e-207 725.3 434 75.3
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.7e-204 716.5 530 66.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.1e-202 709.5 492 66.1
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 2.8e-202 709.1 440 73.4
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.0e-201 705.3 534 64.8
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 3.8e-199 698.7 452 70.1
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.4e-198 696.8 451 69.4
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 1.5e-195 686.8 439 73.1
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.3e-195 685.6 369 82.4
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 4.3e-195 685.3 427 71.4
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 5.6e-195 684.9 561 59.4
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.8e-193 679.9 462 67.7
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.9e-193 677.6 425 68.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 9.9e-192 674.1 378 80.7
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 9.6e-187 657.5 380 77.6
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 9.6e-187 657.5 380 77.6
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 5.3e-185 651.7 441 69.6
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 7.6e-184 647.9 447 68.9
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.9e-182 643.3 520 61.2
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.6e-181 640.2 367 77.9
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.8e-180 636.7 349 82.8
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 2.8e-178 629.4 380 76.1
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 8.1e-178 627.9 325 84.6
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 6.4e-175 618.2 518 60.0
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.2e-173 614.0 366 76.0
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.0e-172 610.9 447 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.2e-170 601.7 418 65.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.0e-168 596.7 408 69.1
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.0e-167 594.3 425 66.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 4.8e-162 575.5 484 57.0
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.1e-157 560.1 457 56.5
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.4e-152 542.7 426 57.7
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.3e-148 530.0 396 59.1
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 8.8e-148 528.1 426 62.0
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 7.7e-144 515.0 321 68.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 8.5e-135 485.0 417 55.9
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 5.5e-134 482.3 269 78.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.1e-121 439.9 255 77.6
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.4e-107 392.9 218 78.0
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 5.9e-104 382.5 448 42.4
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.7e-87 327.8 184 79.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 9.9e-75 285.4 162 77.8
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.1e-72 277.7 424 41.5
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.0e-67 261.2 148 77.0
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.8e-63 248.1 358 39.4
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.1e-57 226.1 110 86.4
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 1.3e-53 215.3 132 74.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.8e-53 213.4 165 63.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 4.9e-50 203.4 148 58.1
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.5e-49 201.1 118 77.1
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.1e-44 185.7 109 78.9
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.3e-42 178.7 185 51.9
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.8e-36 158.3 111 65.8
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 3.8e-34 150.6 186 45.7
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.3e-18 99.0 60 70.0
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.5e-17 95.5 61 65.6
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.8e-07 59.7 152 33.6
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.2e-06 59.3 41 61.0


User provided reference genes

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